PDB entry 5u95

View 5u95 on RCSB PDB site
Description: Structure of the open conformation of 4-coumarate-CoA ligase from Nicotiana tabacum
Class: ligase
Keywords: Ligase, Lignin biosynthesis
Deposited on 2016-12-15, released 2017-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-03-22, with a file datestamp of 2017-03-17.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-coumarate--CoA ligase 2
    Species: Nicotiana tabacum [TaxId:4097]
    Gene: 4CL2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O24146
      • conflict (271)
  • Chain 'B':
    Compound: 4-coumarate--CoA ligase 2
    Species: Nicotiana tabacum [TaxId:4097]
    Gene: 4CL2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O24146
      • conflict (271)
    Domains in SCOPe 2.08: d5u95b_
  • Chain 'C':
    Compound: 4-coumarate--CoA ligase 2
    Species: Nicotiana tabacum [TaxId:4097]
    Gene: 4CL2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O24146
      • conflict (271)
    Domains in SCOPe 2.08: d5u95c_
  • Chain 'D':
    Compound: 4-coumarate--CoA ligase 2
    Species: Nicotiana tabacum [TaxId:4097]
    Gene: 4CL2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O24146
      • conflict (271)
    Domains in SCOPe 2.08: d5u95d_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5u95B (B:)
    mekdtkqvdiifrsklpdiyipnhlplhsycfenisefssrpclingankqiytyadvel
    nsrkvaaglhkqgiqpkdtimillpnspefvfafigasylgaistmanplftpaevvkqa
    kassakiivtqachvnkvkdyafendvkiicidsapegclhfsvltqanehdipeveiqp
    ddvvalpyssgttglpkgvmlthkglvtsvaqqvdgenpnlyihsedvmlcvlplfhiys
    lnsvllcglrvgaailimqkfdivsfleliqsykvtigpfvppivlaiakspmvddydls
    svrtvmsgaaplgkeledtvrakfpnaklgqgygmteagpvlamclafakepfeiksgac
    gtvvrnaemkivdpktgnslprnqsgeicirgdqimkgylndpeatartidkegwlytgd
    igyiddddelfivdrlkelikykgfqvapaelealllnhpnisdaavvpmkdeqagevpv
    afvvrsngstitedevkdfiskqvifykrikrvffvdaipkspsgkilrkdlraklaagl
    pn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5u95B (B:)
    diifrsklpdiyipnhlplhsycfenisefssrpclingankqiytyadvelnsrkvaag
    lhkqgiqpkdtimillpnspefvfafigasylgaistmanplftpaevvkqakassakii
    vtqachvnkvkdyafendvkiicidsapegclhfsvltqanehdipeveiqpddvvalpy
    ssgttglpkgvmlthkglvtsvaqqvdgenpnlyihsedvmlcvlplfhiyslnsvllcg
    lrvgaailimqkfdivsfleliqsykvtigpfvppivlaiakspmvddydlssvrtvmsg
    aaplgkeledtvrakfpnaklgqgygmteagpvlamclafakepfeiksgacgtvvrnae
    mkivdpktgnslprnqsgeicirgdqimkgylndpeatartidkegwlytgdigyidddd
    elfivdrlkelikykgfqvapaelealllnhpnisdaavvpmkagevpvafvvrsngsti
    tedevkdfiskqvifykrikrvffvdaipkspsgkilrkdlraklaa
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5u95C (C:)
    mekdtkqvdiifrsklpdiyipnhlplhsycfenisefssrpclingankqiytyadvel
    nsrkvaaglhkqgiqpkdtimillpnspefvfafigasylgaistmanplftpaevvkqa
    kassakiivtqachvnkvkdyafendvkiicidsapegclhfsvltqanehdipeveiqp
    ddvvalpyssgttglpkgvmlthkglvtsvaqqvdgenpnlyihsedvmlcvlplfhiys
    lnsvllcglrvgaailimqkfdivsfleliqsykvtigpfvppivlaiakspmvddydls
    svrtvmsgaaplgkeledtvrakfpnaklgqgygmteagpvlamclafakepfeiksgac
    gtvvrnaemkivdpktgnslprnqsgeicirgdqimkgylndpeatartidkegwlytgd
    igyiddddelfivdrlkelikykgfqvapaelealllnhpnisdaavvpmkdeqagevpv
    afvvrsngstitedevkdfiskqvifykrikrvffvdaipkspsgkilrkdlraklaagl
    pn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5u95C (C:)
    diifrsklpdiyipnhlplhsycfenisefssrpclingankqiytyadvelnsrkvaag
    lhkqgiqpkdtimillpnspefvfafigasylgaistmanplftpaevvkqakassakii
    vtqachvnkvkdyafendvkiicidsapegclhfsvltqanehdipeveiqpddvvalpy
    ssttglpkgvmlthkglvtsvaqqvdgenpnlyihsedvmlcvlplfhiyslnsvllcgl
    rvgaailimqkfdivsfleliqsykvtigpfvppivlaiakspmvddydlssvrtvmsga
    aplgkeledtvrakfpnaklgqgygmteagpvlamclafakepfeiksgacgtvvrnaem
    kivdpktgnslprnqsgeicirgdqimkgylndpeatartidkegwlytgdigyidddde
    lfivdrlkelikykgfqvapaelealllnhpnisdaavvpmkqagevpvafvvrsgstit
    edevkdfiskqvifykrikrvffvdaipgkilrkdlraklaa
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5u95D (D:)
    mekdtkqvdiifrsklpdiyipnhlplhsycfenisefssrpclingankqiytyadvel
    nsrkvaaglhkqgiqpkdtimillpnspefvfafigasylgaistmanplftpaevvkqa
    kassakiivtqachvnkvkdyafendvkiicidsapegclhfsvltqanehdipeveiqp
    ddvvalpyssgttglpkgvmlthkglvtsvaqqvdgenpnlyihsedvmlcvlplfhiys
    lnsvllcglrvgaailimqkfdivsfleliqsykvtigpfvppivlaiakspmvddydls
    svrtvmsgaaplgkeledtvrakfpnaklgqgygmteagpvlamclafakepfeiksgac
    gtvvrnaemkivdpktgnslprnqsgeicirgdqimkgylndpeatartidkegwlytgd
    igyiddddelfivdrlkelikykgfqvapaelealllnhpnisdaavvpmkdeqagevpv
    afvvrsngstitedevkdfiskqvifykrikrvffvdaipkspsgkilrkdlraklaagl
    pn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5u95D (D:)
    diifrsklpdiyipnhlplhsycfenisefssrpclingankqiytyadvelnsrkvaag
    lhkqgiqpkdtimillpnspefvfafigasylgaistmanplftpaevvkqakassakii
    vtqachvnkvkdyafendvkiicidsapegclhfsvltqanehdipeveiqpddvvalpy
    ssgttglpkgvmlthkglvtsvaqqvdgenpnlyihsedvmlcvlplfhiyslnsvllcg
    lrvgaailimqkfdivsfleliqsykvtigpfvppivlaiakspmvddydlssvrtvmsg
    aaplgkeledtvrakfpnaklgqgygmteagpvlamclafakepfeiksgacgtvvrnae
    mkivdpktgnslprnqsgeicirgdqimkgylndpeatartidkegwlytgdigyidddd
    elfivdrlkelikgfqvapaelealllnhpnisdaavvpmvpvafvvrtitedevkdfis
    kqvifykrikrvffvdaipksp