PDB entry 5u08
View 5u08 on RCSB PDB site
Description: Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample in complex with sisomicin
Class: transferase/antibiotic
Keywords: GNAT fold, GCN5-N-acetyltransferase fold, acetyltransferase, aminoglycoside, sisomicin, antibiotic resistance, metagenome, soil, coenzyme A, structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, TRANSFERASE-ANTIBIOTIC complex
Deposited on
2016-11-23, released
2017-02-08
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-12-11, with a file datestamp of
2019-12-06.
Experiment type: XRAY
Resolution: 1.52 Å
R-factor: N/A
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: aminoglycoside acetyltransferase meta-AAC0020
Species: Uncultured bacterium [TaxId:77133]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A059WZ16 (Start-156)
- engineered mutation (137)
Domains in SCOPe 2.08: d5u08a_ - Chain 'B':
Compound: aminoglycoside acetyltransferase meta-AAC0020
Species: Uncultured bacterium [TaxId:77133]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A059WZ16 (Start-156)
- engineered mutation (137)
Domains in SCOPe 2.08: d5u08b_ - Chain 'C':
Compound: aminoglycoside acetyltransferase meta-AAC0020
Species: Uncultured bacterium [TaxId:77133]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A059WZ16 (Start-156)
- engineered mutation (137)
Domains in SCOPe 2.08: d5u08c_ - Chain 'D':
Compound: aminoglycoside acetyltransferase meta-AAC0020
Species: Uncultured bacterium [TaxId:77133]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A059WZ16 (Start-156)
- engineered mutation (137)
Domains in SCOPe 2.08: d5u08d_ - Heterogens: SIS, MG, ACT, CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5u08A (A:)
mgqnmeidnflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvf
vallenkivggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgf
eevfvqadkvddyaldfarstkptaeeqvvhfyytlk
Sequence, based on observed residues (ATOM records): (download)
>5u08A (A:)
eidnflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvfvalle
nkivggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgfeevfv
qadkvddyaldfarstkptaeeqvvhfyytlk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5u08B (B:)
mgqnmeidnflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvf
vallenkivggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgf
eevfvqadkvddyaldfarstkptaeeqvvhfyytlk
Sequence, based on observed residues (ATOM records): (download)
>5u08B (B:)
dnflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvfvallenk
ivggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgfeevfvqa
dkvddyaldfarstkptaeeqvvhfyytlk
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5u08C (C:)
mgqnmeidnflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvf
vallenkivggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgf
eevfvqadkvddyaldfarstkptaeeqvvhfyytlk
Sequence, based on observed residues (ATOM records): (download)
>5u08C (C:)
dnflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvfvallenk
ivggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgfeevfvqa
dkvddyaldfarstkptaeeqvvhfyytlk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5u08D (D:)
mgqnmeidnflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvf
vallenkivggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgf
eevfvqadkvddyaldfarstkptaeeqvvhfyytlk
Sequence, based on observed residues (ATOM records): (download)
>5u08D (D:)
nflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvfvallenki
vggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgfeevfvqad
kvddyaldfarstkptaeeqvvhfyytlk