PDB entry 5t2p

View 5t2p on RCSB PDB site
Description: Hepatitis B virus core protein Y132A mutant in complex with sulfamoylbenzamide (SBA_R01)
Class: viral protein
Keywords: HEPATITIS B VIRUS, HBV, CORE PROTEIN, CAPSID, Y132A DIMER, Y132A HEXAMER, sulfamoylbenzamide, SBA_R01, VIRAL PROTEIN
Deposited on 2016-08-24, released 2017-02-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 1.69 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-148)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5t2pa1, d5t2pa2
  • Chain 'B':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-148)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5t2pb1, d5t2pb2
  • Chain 'C':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-End)
      • engineered mutation (131)
    Domains in SCOPe 2.08: d5t2pc_
  • Chain 'D':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-148)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5t2pd1, d5t2pd2
  • Chain 'E':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-148)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5t2pe1, d5t2pe2
  • Chain 'F':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-End)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5t2pf1, d5t2pf2
  • Heterogens: K89, IPA, DMS, GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5t2pA (A:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5t2pA (A:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilsvenlyfq

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5t2pB (B:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5t2pC (C:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5t2pC (C:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilst

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5t2pD (D:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5t2pE (E:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5t2pE (E:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlvenlyfq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5t2pF (F:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5t2pF (F:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstenlyfq