PDB entry 5pkk
View 5pkk on RCSB PDB site
Description: PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 105)
Class: oxidoreductase
Keywords: PanDDA, SGC - Diamond I04-1 fragment screening, Jmj domain, epigenetics, OXIDOREDUCTASE
Deposited on
2017-02-07, released
2017-03-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-04, with a file datestamp of
2017-09-29.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Lysine-specific demethylase 4D
Species: Homo sapiens [TaxId:9606]
Gene: KDM4D, JHDM3D, JMJD2D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5pkka_ - Heterogens: ZN, NI, MG, OGA, EDO, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5pkkA (A:)
mhhhhhhssgvdlgtenlyfqsmetmkskancaqnpncnimifhptkeefndfdkyiaym
esqgahraglakiippkewkaretydniseiliatplqqvasgragvftqyhkkkkamtv
geyrhlanskkyqtpphqnfedlerkywknriynspiygadisgslfdentkqwnlghlg
tiqdllekecgvviegvntpylyfgmwkttfawhtedmdlysinylhlgepktwyvvppe
hgqrlerlarelfpgssrgcgaflrhkvalisptvlkengipfnritqeagefmvtfpyg
yhagfnhgfncaeainfatprwidygkmasqcscgearvtfsmdafvrilqperydlwkr
gqdr
Sequence, based on observed residues (ATOM records): (download)
>5pkkA (A:)
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgqd