PDB entry 5oxs

View 5oxs on RCSB PDB site
Description: Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide
Class: surfactant protein
Keywords: trimeric recombinant collectin fragment, neck+CRD, alpha-helical coiled coil, carbohydrate recognition domain, lectin, sugar binding protein, SURFACTANT PROTEIN
Deposited on 2017-09-07, released 2018-06-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, COLEC7, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oxsa1, d5oxsa2
  • Chain 'B':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, COLEC7, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oxsb1, d5oxsb2
  • Chain 'C':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, COLEC7, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oxsc1, d5oxsc2
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5oxsA (A:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >5oxsA (A:)
vaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctq
aggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepn
ddggsedcveiftngkwndracgekrlvvcef

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5oxsB (B:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >5oxsB (B:)
dvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllct
qaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgep
nddggsedcveiftngkwndracgekrlvvcef

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5oxsC (C:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >5oxsC (C:)
dvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllct
qaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgep
nddggsedcveiftngkwndracgekrlvvcef