PDB entry 5oxd

View 5oxd on RCSB PDB site
Description: Complex of a C. perfringens O-GlcNAcase with a fragment hit
Class: hydrolase
Keywords: HYDROLASE, Fragment complex, CARBOHYDRATE
Deposited on 2017-09-06, released 2018-05-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-05-16, with a file datestamp of 2018-05-11.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Gene: nagJ, CPF_1442
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0TR53 (Start-589)
      • conflict (359)
    Domains in SCOPe 2.07: d5oxda1, d5oxda2, d5oxda3
  • Heterogens: CD, B2W, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5oxdA (A:)
gsvgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalreflta
nnieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkd
gdgtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygen
klntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgd
ageedfnhlitkaeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkpl
itvpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiyd
rnmavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadys
wnmdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdel
wnklsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkas
ldmivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqeals

    Sequence, based on observed residues (ATOM records): (download) 
    >5oxdA (A:)
nqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsend
pnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqt
fkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapk
ddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhli
tkaeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplitvpteydtg
amvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiydrnmavwwnyp
vtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydk
awnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskeda
salieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlne
dteayesakeiaqnklntalssfavisekvaqsfiqeals