PDB entry 5ore

View 5ore on RCSB PDB site
Description: Structure of the periplasmic binding protein (PBP) OccJ from agrobacterium tumefaciens B6
Class: dna
Keywords: Agrobacterium tumefaciens, Arginine, Bacterial Proteins, DNA, Bacterial, Gene Expression Regulation, Genes, Ligands, Plant Tumors, Plasmids
Deposited on 2017-08-16, released 2017-12-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-03, with a file datestamp of 2017-12-29.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Octopine-binding periplasmic protein
    Species: Rhizobium radiobacter [TaxId:358]
    Gene: occT, occJ
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A4F8 (1-256)
      • expression tag (257-261)
    Domains in SCOPe 2.08: d5orea1, d5orea2
  • Heterogens: EDO, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5oreA (A:)
mqeksitiateggyapwnfsgpggkldgfeidlanalcekmkakcqivaqnwdgimpslt
gkkydaimaamsvtpkrqevigfsipyaagingfavmgdsklaempglgetysldsqada
akkaiadissflngttvgvqgsttastfldkyfkgsvdikeyksveehnldltsgrldav
lanatvlaaaiekpemkgaklvgplfsggefgvvavglrkedtalkadfdaaikaasedg
tiktlslkwfkvdvtpqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5oreA (A:)
qeksitiateggyapwnfsgpggkldgfeidlanalcekmkakcqivaqnwdgimpsltg
kkydaimaamsvtpkrqevigfsipyaagingfavmgdsklaempglgetysldsqadaa
kkaiadissflngttvgvqgsttastfldkyfkgsvdikeyksveehnldltsgrldavl
anatvlaaaiekpemkgaklvgplfsggefgvvavglrkedtalkadfdaaikaasedgt
iktlslkwfkvdvtpqhhhhh