PDB entry 5oln

View 5oln on RCSB PDB site
Description: X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis at 1.88 A
Class: transferase
Keywords: Transferase, Pyrimidine-nucleoside phosphorylase, NP-2 superfamily
Deposited on 2017-07-28, released 2018-04-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-07-11, with a file datestamp of 2018-07-06.
Experiment type: XRAY
Resolution: 1.88 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyrimidine-nucleoside phosphorylase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: pdp, BSU39400
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5olna1, d5olna2, d5olna3
  • Chain 'B':
    Compound: Pyrimidine-nucleoside phosphorylase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: pdp, BSU39400
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39142 (1-433)
      • expression tag (0)
    Domains in SCOPe 2.08: d5olnb1, d5olnb2, d5olnb3, d5olnb4
  • Heterogens: IMD, EDO, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5olnA (A:)
amrmvdiiikkqngkeltteeiqffvngytdgsipdyqasalamaiffqdmsdreradlt
mamvnsgetidlsaiegikvdkhstggvgdtttlvlaplvaaldvpvakmsgrglghtgg
tidkleaimgfhveltkdefiklvnrdkvavigqsgnltpadkklyalrdvtgtvnsipl
iassimskkiaagadaivldvktgagafmkteedaaelakamvrignnvgrqtmavisdm
sqplgfaignalevkeaidtlkgegpedlhelvltlgsqmvvlakkadtldearakleev
mkngkalekfkdflknqggdssivddpsklpqaayqidvpakeagvvseivadeigvaam
llgagratkedeidlavgimlrkkvgdkvekgeplvtlyanrenvdeviakvydniriaa
eakapklihtlite

    Sequence, based on observed residues (ATOM records): (download) 
    >5olnA (A:)
mrmvdiiikkqngkeltteeiqffvngytdgsipdyqasalamaiffqdmsdreradltm
amvnsgetidlsaiegikvdkhstggvgdtttlvlaplvaaldvpvakmsgrglghtggt
idkleaimgfhveltkdefiklvnrdkvavigqsgnltpadkklyalrdvtgtvnsipli
assimskkiaagadaivldvktgagafmkteedaaelakamvrignnvgrqtmavisdms
qplgfaignalevkeaidtlkgegpedlhelvltlgsqmvvlakkadtldearakleevm
kngkalekfkdflknqggdssivddpsklpqaayqidvpakeagvvseivadeigvaaml
lgagratkedeidlavgimlrkkvgdkvekgeplvtlyanrenvdeviakvydniriaae
akapklihtlite

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5olnB (B:)
amrmvdiiikkqngkeltteeiqffvngytdgsipdyqasalamaiffqdmsdreradlt
mamvnsgetidlsaiegikvdkhstggvgdtttlvlaplvaaldvpvakmsgrglghtgg
tidkleaimgfhveltkdefiklvnrdkvavigqsgnltpadkklyalrdvtgtvnsipl
iassimskkiaagadaivldvktgagafmkteedaaelakamvrignnvgrqtmavisdm
sqplgfaignalevkeaidtlkgegpedlhelvltlgsqmvvlakkadtldearakleev
mkngkalekfkdflknqggdssivddpsklpqaayqidvpakeagvvseivadeigvaam
llgagratkedeidlavgimlrkkvgdkvekgeplvtlyanrenvdeviakvydniriaa
eakapklihtlite