PDB entry 5odu

View 5odu on RCSB PDB site
Description: PllA lectin, monosaccharide complex
Class: sugar binding protein
Keywords: PllA, Complex, Lectin, CARBOHYDRATE, sugar binding protein
Deposited on 2017-07-06, released 2017-10-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.56 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5odua_
  • Chain 'B':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5odub_
  • Chain 'C':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oduc_
  • Chain 'D':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5odud_
  • Chain 'E':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5odue_
  • Chain 'F':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oduf_
  • Chain 'G':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5odug_
  • Chain 'H':
    Compound: PllA
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: plu2096
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5oduh_
  • Heterogens: AMG, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5oduA (A:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduA (A:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
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  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5oduB (B:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduB (B:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
k

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5oduC (C:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduC (C:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
k

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5oduD (D:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduD (D:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
k

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5oduE (E:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduE (E:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
k

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5oduF (F:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduF (F:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
k

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5oduG (G:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduG (G:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
k

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5oduH (H:)
msdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpss
iatlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesrysp
lk

    Sequence, based on observed residues (ATOM records): (download) 
    >5oduH (H:)
sdwsgsvpanaengkstglilkqgdtisvvahgwvkygrdnvewaapdgpvpnnpqpssi
atlvakiankkfaigngvlhktvpvdgelillfndvpgtfgdnsgefqveviiesryspl
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