PDB entry 5obf

View 5obf on RCSB PDB site
Description: fAb. AbVance: increasing our knowledge of antibody structural space to enable faster and better decision-making in antibody drug discovery.
Class: immune system
Keywords: fAb, AbVance project, Pistoia Alliance, immune system
Deposited on 2017-06-26, released 2017-11-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5OBF (Start-216)
    Domains in SCOPe 2.08: d5obfh_
  • Chain 'L':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5OBF (0-216)
    Domains in SCOPe 2.08: d5obfl1, d5obfl2
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5obfH (H:)
evqlqqsgaelvepgasvklsctgsgfnikvyyvhwlkqlteqglewigridpengetiy
tpkfqdkatltvdtssntaylqlssltsedaavyycvssgywgqgttltvssakttapsv
yplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssv
tvtsstwpsqsitcnvahpasstkvdkkieprgptik

    Sequence, based on observed residues (ATOM records): (download) 
    >5obfH (H:)
vqlqqsgaelvepgasvklsctgsgfnikvyyvhwlkqlteqglewigridpengetiyt
pkfqdkatltvdtssntaylqlssltsedaavyycvssgywgqgttltvssakttapsvy
plapvcgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssvtvtss
twpsqsitcnvahpasstkvdkkieprgptik

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5obfL (L:)
divmtqsafsnpvtlgtsasiscrssksllhrngitylywylqkpgqppqlliyqmsnla
sgvpdrftssgsgtdftlkisrveaedvgvyycaqnlelwtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrne