PDB entry 5o2e
View 5o2e on RCSB PDB site
Description: Crystal structure of NDM-1 in complex with hydrolyzed cefuroxime - new refinement
Class: hydrolase
Keywords: HYDROLASE, NDM-1, metallo-beta-lactamase
Deposited on
2017-05-20, released
2018-12-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-10-16, with a file datestamp of
2019-10-11.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: N/A
AEROSPACI score: 0.59
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Metallo-beta-lactamase type 2
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5o2ea_ - Chain 'B':
Compound: Metallo-beta-lactamase type 2
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5o2eb_ - Heterogens: ZN, SO4, 3S0, UNL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5o2eA (A:)
geirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlv
vdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnql
apqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggc
likdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadk
lr
Sequence, based on observed residues (ATOM records): (download)
>5o2eA (A:)
rptiqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtaw
tddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqeg
mvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikds
kakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5o2eB (B:)
geirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlv
vdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnql
apqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggc
likdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadk
lr
Sequence, based on observed residues (ATOM records): (download)
>5o2eB (B:)
irptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvd
tawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlap
qegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggcli
kdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr