SCOPe 2.08: Structural Classification of Proteins

PDB entry 5nsf

View 5nsf on RCSB PDB site
Description: Structure of AzuAla
Class: ligase
Keywords: nncA, ligase
Deposited on 2017-04-26, released 2019-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 2.43 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Tyrosine--tRNA ligase
Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
Gene: tyrS, MJ0389
Database cross-references and differences (RAF-indexed):
- Uniprot Q57834 (Start-317)
  - conflict (43)
  - conflict (76)
  - conflict (81)
  - conflict (119-120)
  - conflict (169)
  - conflict (173)
  - conflict (297)
Domains in SCOPe 2.08: d5nsfa_
Chain 'B':
Compound: Tyrosine--tRNA ligase
Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
Gene: tyrS, MJ0389
Database cross-references and differences (RAF-indexed):
- Uniprot Q57834 (12-317)
  - conflict (43)
  - conflict (76)
  - conflict (81)
  - conflict (119-120)
  - conflict (169)
  - conflict (173)
  - conflict (297)
Domains in SCOPe 2.08: d5nsfb_
Chain 'C':
Compound: Tyrosine--tRNA ligase
Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
Gene: tyrS, MJ0389
Database cross-references and differences (RAF-indexed):
- Uniprot Q57834 (12-317)
  - conflict (43)
  - conflict (76)
  - conflict (81)
  - conflict (119-120)
  - conflict (169)
  - conflict (173)
  - conflict (297)
Domains in SCOPe 2.08: d5nsfc_
Chain 'D':
Compound: Tyrosine--tRNA ligase
Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
Gene: tyrS, MJ0389
Database cross-references and differences (RAF-indexed):
- Uniprot Q57834 (Start-317)
  - conflict (43)
  - conflict (76)
  - conflict (81)
  - conflict (119-120)
  - conflict (169)
  - conflict (173)
  - conflict (297)
Domains in SCOPe 2.08: d5nsfd_
Heterogens: 96Z, GOL, CA, PG4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5nsfA (A:)
mrgshhhhhhgsmdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylq
ikkmidlqnagfdiiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygseh
nldkdytlnvyrlalkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvav
ggmeqrkihmlarellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikk
aycpagvvegnpimeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlk
navaeelikilepirkrl

Sequence, based on observed residues (ATOM records): (download)

>5nsfA (A:)
defemikrntseiiseeelrevlkkdeksagigfepsgkihlghylqikkmidlqnagfd
iiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygsehnldkdytlnvyrl
alkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvavggmeqrkihmlar
ellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnpi
meiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlknavaeelikilep
irkrl

Chain 'B':
Sequence, based on SEQRES records: (download)

>5nsfB (B:)
mrgshhhhhhgsmdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylq
ikkmidlqnagfdiiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygseh
nldkdytlnvyrlalkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvav
ggmeqrkihmlarellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikk
aycpagvvegnpimeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlk
navaeelikilepirkrl

Sequence, based on observed residues (ATOM records): (download)

>5nsfB (B:)
mdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylqikkmidlqnagf
diiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygsehnldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlknavaeelikile
pirkrl

Chain 'C':
Sequence, based on SEQRES records: (download)

>5nsfC (C:)
mrgshhhhhhgsmdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylq
ikkmidlqnagfdiiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygseh
nldkdytlnvyrlalkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvav
ggmeqrkihmlarellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikk
aycpagvvegnpimeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlk
navaeelikilepirkrl

Sequence, based on observed residues (ATOM records): (download)

>5nsfC (C:)
mdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylqikkmidlqnagf
diiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygsehnldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlknavaeelikile
pirkrl

Chain 'D':
Sequence, based on SEQRES records: (download)

>5nsfD (D:)
mrgshhhhhhgsmdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylq
ikkmidlqnagfdiiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygseh
nldkdytlnvyrlalkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvav
ggmeqrkihmlarellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikk
aycpagvvegnpimeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlk
navaeelikilepirkrl

Sequence, based on observed residues (ATOM records): (download)

>5nsfD (D:)
defemikrntseiiseeelrevlkkdeksagigfepsgkihlghylqikkmidlqnagfd
iiiwladlgaylnqkgeldeirkigdynkkvfeamglkakyvygsehnldkdytlnvyrl
alkttlkrarrsmeliaredenpkvaeviypimqvnaihyngvdvavggmeqrkihmlar
ellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnpi
meiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlknavaeelikilep
irkrl