PDB entry 5neu
View 5neu on RCSB PDB site
Description: Localised Reconstruction of Integrin alpha v beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose B
Class: virus
Keywords: Foot and Mouth Disease Virus, FMDV, virus, OpanAsia, virus-receptor, complex
Deposited on
2017-03-11, released
2017-06-21
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-06-21, with a file datestamp of
2017-06-16.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.13
(click here for full SPACI score report)
Chains and heterogens:
- Chain '1':
Compound: O1 Manisa VP1
Species: Foot-and-mouth disease virus [TaxId:12110]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5neu1_ - Chain '2':
Compound: O1 Manisa VP2
Species: Foot-and-mouth disease virus [TaxId:12110]
Database cross-references and differences (RAF-indexed):
- Chain '3':
Compound: capsid protein
Species: Foot-and-mouth disease virus [TaxId:12110]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A1C6ZW60 (0-219)
- conflict (167)
- conflict (173)
Domains in SCOPe 2.06: d5neu3_ - Chain '4':
Compound: O1 Manisa VP4
Species: Foot-and-mouth disease virus [TaxId:12110]
Database cross-references and differences (RAF-indexed):
- Chain 'A':
Compound: Integrin alpha-V
Species: Homo sapiens [TaxId:9606]
Gene: ITGAV, MSK8, VNRA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5neua1, d5neua2 - Chain 'B':
Compound: integrin beta-6
Species: Homo sapiens [TaxId:9606]
Gene: ITGB6
Database cross-references and differences (RAF-indexed):
- Uniprot P18564 (0-469)
- conflict (265)
- conflict (447)
- Heterogens: MG, CA
PDB Chain Sequences:
- Chain '1':
Sequence; same for both SEQRES and ATOM records: (download)
>5neu1 (1:)
ttsagesadpvtatvenyggetqvqrrqhtdvsfildrfvkvtpkdqinvldlmqtpaht
lvgallrtatyyfadlevavkhegnltwvpngapeaaldnttnptayhkapltrlalpyt
aphrvlatvyngnskygdgtvanvrgdlqvlaqkaaralptsfnygaikatrvtellyrm
kraetycprpllaihpdqarhkqkivap
- Chain '2':
No sequence available.
- Chain '3':
Sequence; same for both SEQRES and ATOM records: (download)
>5neu3 (3:)
gifpvacsdgygglvttdpktadpaygkvfnpprnmlpgrftnfldvaeacptflhfegd
vpyvttktdsdrvlaqfdlslaakhmsntflaglaqyytqysgtinlhfmftgptdakar
ymiayappgmeppktpeaaahcihaewdtglnskftfsipylsaadytytasdvaettnv
qgwvclfqithgkadgdalvvlasagkdfelrlpvdartq
- Chain '4':
No sequence available.
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5neuA (A:)
fnldvdspaeysgpegsyfgfavdffvpssrmfllvgapkanttqpgiveggqvlkcdws
strrcqpiefdatgnrdyakddplefkshqwfgasvrskqdkilacaplyhwrtemkqer
epvgtcflqdgtktveyapcrsqdidadgqgfcqggfsidftkadrvllggpgsfywqgq
lisdqvaeivskydpnvysikynnqlatrtaqaifddsylgysvavgdfngdgiddfvsg
vpraartlgmvyiydgknmsslynftgeqmaayfgfsvaatdingddyadvfigaplfmd
rgsdgklqevgqvsvslqrasgdfqttklngfevfarfgsaiaplgdldqdgfndiaiaa
pyggedkkgivyifngrstglnavpsqilegqwaarscppsfgysmkgatdidkngypdl
ivgafgvdrailyrarpvitvnaglevypsilnqdnktcslpgtalkvscfnvrfclkad
gkgvlprklnfqvellldklkgairralflysrspshsknmtisrgglmqceeliaylrd
esefrdkltpitifmeyrldyrtaadttglqpilnqftpanisrqahill
- Chain 'B':
No sequence available.