PDB entry 5nbw

View 5nbw on RCSB PDB site
Description: Crystal structure of the Fab fragment 22F12 in complex with 3-hydroxybenzo[a]pyrene
Class: immune system
Keywords: antibody, benzo[a]pyrene, Fab fragment, hapten, immune system
Deposited on 2017-03-02, released 2017-06-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-08-30, with a file datestamp of 2017-08-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fab 22F12 (L,H)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NBW (0-213)
    Domains in SCOPe 2.08: d5nbwa1, d5nbwa2
  • Chain 'B':
    Compound: Fab 22F12 (A,B)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NBW (0-End)
    Domains in SCOPe 2.08: d5nbwb_
  • Chain 'H':
    Compound: Fab 22F12 (A,B)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NBW (0-End)
    Domains in SCOPe 2.08: d5nbwh_
  • Chain 'L':
    Compound: Fab 22F12 (L,H)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NBW (0-213)
    Domains in SCOPe 2.08: d5nbwl1, d5nbwl2
  • Heterogens: 8SK, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nbwA (A:)
dieltqspssmyaslgervtitckasqdinsylnwfqqkpgkspktliyhtnrlvdgvps
rfsgsgsgqdysliisslefedmgiyyclqydefpytfgggtklelkradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5nbwB (B:)
evklhqsgaelvnpgasvkisckapgytfnnywiewvkqrpghglewigeilpgsgriny
nekfkdkatftadtssntaymqlssltsddsavyycakkygdywgqgttvtvssakttpp
svyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprdchhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5nbwB (B:)
evklhqsgaelvnpgasvkisckapgytfnnywiewvkqrpghglewigeilpgsgriny
nekfkdkatftadtssntaymqlssltsddsavyycakkygdywgqgttvtvssakttpp
svyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprdc

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5nbwH (H:)
evklhqsgaelvnpgasvkisckapgytfnnywiewvkqrpghglewigeilpgsgriny
nekfkdkatftadtssntaymqlssltsddsavyycakkygdywgqgttvtvssakttpp
svyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprdchhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5nbwH (H:)
evklhqsgaelvnpgasvkisckapgytfnnywiewvkqrpghglewigeilpgsgriny
nekfkdkatftadtssntaymqlssltsddsavyycakkygdywgqgttvtvssakttpp
svyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprdc

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nbwL (L:)
dieltqspssmyaslgervtitckasqdinsylnwfqqkpgkspktliyhtnrlvdgvps
rfsgsgsgqdysliisslefedmgiyyclqydefpytfgggtklelkradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec