PDB entry 5nb3

View 5nb3 on RCSB PDB site
Description: High resolution C-phycoerythrin from marine cyanobacterium Phormidium sp. A09DM at pH 7.5
Class: photosynthesis
Keywords: Photosynthesis, marine cyanobacterium Phormidium sp.A09DM, C-phycoerythrin, pigment-protein light harvesting complex
Deposited on 2017-03-01, released 2017-09-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-02-07, with a file datestamp of 2018-02-02.
Experiment type: XRAY
Resolution: 1.38 Å
R-factor: N/A
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3a_
  • Chain 'B':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3b_
  • Chain 'C':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3c_
  • Chain 'D':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3d_
  • Chain 'E':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3e_
  • Chain 'F':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3f_
  • Chain 'G':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3g_
  • Chain 'H':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3h_
  • Chain 'I':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3i_
  • Chain 'J':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3j_
  • Chain 'K':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3k_
  • Chain 'L':
    Compound: Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3l_
  • Chain 'M':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3m_
  • Chain 'N':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3n_
  • Chain 'O':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3o_
  • Chain 'P':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3p_
  • Chain 'Q':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3q_
  • Chain 'R':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3r_
  • Chain 'S':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3s_
  • Chain 'T':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3t_
  • Chain 'U':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3u_
  • Chain 'V':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3v_
  • Chain 'W':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3w_
  • Chain 'X':
    Compound: Phycoerythrin Beta subunit,Phycoerythrin Beta subunit
    Species: Phormidium rubidum A09DM [TaxId:865859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nb3x_
  • Heterogens: PEB, FMT, NA, CL, MPD, MRD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3A (A:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3B (B:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3C (C:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3D (D:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3E (E:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3F (F:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3G (G:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3H (H:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3I (I:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3J (J:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3K (K:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3L (L:)
mksvvttviaaadaagrfpsssdlesvqgsiqrsaarleaaeklagnidavaqeaynaci
qkypylnnsgeanstdtfkakclrdvkhymrliqyslvvggtgpldewgiagqrevyral
glptapyvealsfarnrgcaprdmsaqalteynalldyainsls

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3M (M:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3N (N:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3O (O:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3P (P:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3Q (Q:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3R (R:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3S (S:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3T (T:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3U (U:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3V (V:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3W (W:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5nb3X (X:)
mldafsravvqadastsvvadmgalkqfiaegnrrldavnaiasnascmvsdavagmice
nqgliqaggncypnrrmaaclrdaeiilryvtyallagdasvlddrclnglketyaalgv
pttstvravqimkaqaaahikdtpsearaggklrkmgspvvedrcaslvaeassyfdrvi
sals