PDB entry 5naq

View 5naq on RCSB PDB site
Description: Crystal structure of native 6-phospho-glucosidase LpBgl from Lactobacillus plantarum
Class: hydrolase
Keywords: cysteine residue, glycosidase, protein aggregation, reducing agent, solubility enhancer, hydrolase
Deposited on 2017-02-28, released 2017-08-02
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-08-02, with a file datestamp of 2017-07-28.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-galactosidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: bgl, lp_3629
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5naqa_
  • Chain 'B':
    Compound: beta-galactosidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: bgl, lp_3629
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5naqb_
  • Chain 'C':
    Compound: beta-galactosidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: bgl, lp_3629
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5naqc_
  • Chain 'D':
    Compound: beta-galactosidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: bgl, lp_3629
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5naqd_
  • Chain 'E':
    Compound: beta-galactosidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: bgl, lp_3629
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5naqe_
  • Chain 'F':
    Compound: beta-galactosidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: bgl, lp_3629
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5naqf_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5naqA (A:)
mggshhhhhhgddddkmvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfda
gvgpdtasnfyndydhdlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvid
smlahhitpyinlhhfdlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfn
epkvvvdgqylygwhypqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnl
tpayaasddpadlaaaefaelwsnnlfldpavlghfpeklverltmdgvlwdatptelai
iaanpvdclgvnyyhpfrvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqa
mtdiarniqknygnipwmisengmgvageerfldkqgvvqddyridfmkehltalakgia
agsncqgyfvwsgidcwswnhayhnryglirndihtqtktlkksakwfaelgerngf

    Sequence, based on observed residues (ATOM records): (download) 
    >5naqA (A:)
mvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfdagvgpdtasnfyndydh
dlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvidsmlahhitpyinlhhf
dlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfnepkvvvdgqylygwhy
pqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnltpayaasddpadlaaa
efaelwsnnlfldpavlghfpeklverltmdgvlwdatptelaiiaanpvdclgvnyyhp
frvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqamtdiarniqknygnip
wmisengmgvageerfldkqgvvqddyridfmkehltalakgiaagsncqgyfvwsgidc
wswnhayhnryglirndihtqtktlkksakwfaelgerngf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5naqB (B:)
mggshhhhhhgddddkmvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfda
gvgpdtasnfyndydhdlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvid
smlahhitpyinlhhfdlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfn
epkvvvdgqylygwhypqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnl
tpayaasddpadlaaaefaelwsnnlfldpavlghfpeklverltmdgvlwdatptelai
iaanpvdclgvnyyhpfrvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqa
mtdiarniqknygnipwmisengmgvageerfldkqgvvqddyridfmkehltalakgia
agsncqgyfvwsgidcwswnhayhnryglirndihtqtktlkksakwfaelgerngf

    Sequence, based on observed residues (ATOM records): (download) 
    >5naqB (B:)
mvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfdagvgpdtasnfyndydh
dlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvidsmlahhitpyinlhhf
dlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfnepkvvvdgqylygwhy
pqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnltpayaasddpadlaaa
efaelwsnnlfldpavlghfpeklverltmdgvlwdatptelaiiaanpvdclgvnyyhp
frvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqamtdiarniqknygnip
wmisengmgvageerfldkqgvvqddyridfmkehltalakgiaagsncqgyfvwsgidc
wswnhayhnryglirndihtqtktlkksakwfaelgerngf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5naqC (C:)
mggshhhhhhgddddkmvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfda
gvgpdtasnfyndydhdlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvid
smlahhitpyinlhhfdlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfn
epkvvvdgqylygwhypqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnl
tpayaasddpadlaaaefaelwsnnlfldpavlghfpeklverltmdgvlwdatptelai
iaanpvdclgvnyyhpfrvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqa
mtdiarniqknygnipwmisengmgvageerfldkqgvvqddyridfmkehltalakgia
agsncqgyfvwsgidcwswnhayhnryglirndihtqtktlkksakwfaelgerngf

    Sequence, based on observed residues (ATOM records): (download) 
    >5naqC (C:)
mvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfdagvgpdtasnfyndydh
dlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvidsmlahhitpyinlhhf
dlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfnepkvvvdgqylygwhy
pqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnltpayaasddpadlaaa
efaelwsnnlfldpavlghfpeklverltmdgvlwdatptelaiiaanpvdclgvnyyhp
frvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqamtdiarniqknygnip
wmisengmgvageerfldkqgvvqddyridfmkehltalakgiaagsncqgyfvwsgidc
wswnhayhnryglirndihtqtktlkksakwfaelgerngf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5naqD (D:)
mggshhhhhhgddddkmvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfda
gvgpdtasnfyndydhdlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvid
smlahhitpyinlhhfdlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfn
epkvvvdgqylygwhypqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnl
tpayaasddpadlaaaefaelwsnnlfldpavlghfpeklverltmdgvlwdatptelai
iaanpvdclgvnyyhpfrvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqa
mtdiarniqknygnipwmisengmgvageerfldkqgvvqddyridfmkehltalakgia
agsncqgyfvwsgidcwswnhayhnryglirndihtqtktlkksakwfaelgerngf

    Sequence, based on observed residues (ATOM records): (download) 
    >5naqD (D:)
mvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfdagvgpdtasnfyndydh
dlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvidsmlahhitpyinlhhf
dlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfnepkvvvdgqylygwhy
pqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnltpayaasddpadlaaa
efaelwsnnlfldpavlghfpeklverltmdgvlwdatptelaiiaanpvdclgvnyyhp
frvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqamtdiarniqknygnip
wmisengmgvageerfldkqgvvqddyridfmkehltalakgiaagsncqgyfvwsgidc
wswnhayhnryglirndihtqtktlkksakwfaelgerngf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5naqE (E:)
mggshhhhhhgddddkmvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfda
gvgpdtasnfyndydhdlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvid
smlahhitpyinlhhfdlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfn
epkvvvdgqylygwhypqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnl
tpayaasddpadlaaaefaelwsnnlfldpavlghfpeklverltmdgvlwdatptelai
iaanpvdclgvnyyhpfrvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqa
mtdiarniqknygnipwmisengmgvageerfldkqgvvqddyridfmkehltalakgia
agsncqgyfvwsgidcwswnhayhnryglirndihtqtktlkksakwfaelgerngf

    Sequence, based on observed residues (ATOM records): (download) 
    >5naqE (E:)
mvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfdagvgpdtasnfyndydh
dlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvidsmlahhitpyinlhhf
dlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfnepkvvvdgqylygwhy
pqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnltpayaasddpadlaaa
efaelwsnnlfldpavlghfpeklverltmdgvlwdatptelaiiaanpvdclgvnyyhp
frvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqamtdiarniqknygnip
wmisengmgvageerfldkqgvvqddyridfmkehltalakgiaagsncqgyfvwsgidc
wswnhayhnryglirndihtqtktlkksakwfaelgerngf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5naqF (F:)
mggshhhhhhgddddkmvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfda
gvgpdtasnfyndydhdlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvid
smlahhitpyinlhhfdlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfn
epkvvvdgqylygwhypqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnl
tpayaasddpadlaaaefaelwsnnlfldpavlghfpeklverltmdgvlwdatptelai
iaanpvdclgvnyyhpfrvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqa
mtdiarniqknygnipwmisengmgvageerfldkqgvvqddyridfmkehltalakgia
agsncqgyfvwsgidcwswnhayhnryglirndihtqtktlkksakwfaelgerngf

    Sequence, based on observed residues (ATOM records): (download) 
    >5naqF (F:)
mvefpegfvwgaatsgpqtegnfhkqhqnvfdywfatepeqfdagvgpdtasnfyndydh
dlalmaqagvqglrtsiqwtrliddfetaslnadgvafynhvidsmlahhitpyinlhhf
dlpvalydkyhgweskhvvelfvkfaeqcfklfgdrvdhwytfnepkvvvdgqylygwhy
pqvingpkavqvaynmnlasaktvarfhelcvrpeqqigiilnltpayaasddpadlaaa
efaelwsnnlfldpavlghfpeklverltmdgvlwdatptelaiiaanpvdclgvnyyhp
frvqrpdispkslqpwmpdiyfkeydmpgrmmnvdrgweiypqamtdiarniqknygnip
wmisengmgvageerfldkqgvvqddyridfmkehltalakgiaagsncqgyfvwsgidc
wswnhayhnryglirndihtqtktlkksakwfaelgerngf