PDB entry 5mzy
View 5mzy on RCSB PDB site
Description: Crystal structure of the decarboxylase AibA/AibB in complex with a possible transition state analog
Class: lyase
Keywords: decarboxylase, CoA transferase like fold, transition state analog, lyase
Deposited on
2017-02-02, released
2017-05-31
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-05-31, with a file datestamp of
2017-05-26.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Glutaconate CoA-transferase family, subunit A
Species: Myxococcus xanthus (strain DK 1622) [TaxId:246197]
Gene: MXAN_4264
Database cross-references and differences (RAF-indexed):
- Uniprot Q1D4I4 (0-End)
- engineered mutation (190)
- Chain 'B':
Compound: Glutaconate CoA-transferase family, subunit B
Species: Myxococcus xanthus (strain DK 1622) [TaxId:246197]
Gene: MXAN_4265
Database cross-references and differences (RAF-indexed):
- Uniprot Q1D4I3 (Start-247)
- engineered mutation (201-202)
Domains in SCOPe 2.06: d5mzyb_ - Chain 'C':
Compound: Glutaconate CoA-transferase family, subunit A
Species: Myxococcus xanthus (strain DK 1622) [TaxId:246197]
Gene: MXAN_4264
Database cross-references and differences (RAF-indexed):
- Uniprot Q1D4I4 (0-End)
- engineered mutation (190)
- Chain 'D':
Compound: Glutaconate CoA-transferase family, subunit B
Species: Myxococcus xanthus (strain DK 1622) [TaxId:246197]
Gene: MXAN_4265
Database cross-references and differences (RAF-indexed):
- Uniprot Q1D4I3 (Start-247)
- engineered mutation (201-202)
Domains in SCOPe 2.06: d5mzyd_ - Heterogens: GOL, ACT, 8EZ, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5mzyB (B:)
phmsatlditpaetvvsllarqiddggvvatgvasplailaiavarathapdltylacvg
sldpeiptllpssedlgyldgrsaeitipdlfdharrgrvdtvffgaaevdaegrtnmta
sgsldkprtkfpgvagaatlrqwvrrpvllvprqsrrnlvpevqvattrdprrpvtlisd
lgvfelgasgarllarhpwasaahiaertgfafqvsealsvtslpdartvaairaidphg
yrdalvga
Sequence, based on observed residues (ATOM records): (download)
>5mzyB (B:)
atlditpaetvvsllarqiddggvvatgvasplailaiavarathapdltylacvgsldp
eiptllpssedlgyldgrsaeitipdlfdharrgrvdtvffgaaevdaegrtnmtasgsl
dkprtkfpgvagaatlrqwvrrpvllvprqsrrnlvpevqvattrdprrpvtlisdlgvf
elgasgarllarhpwasaahiaertgfafqvsealsvtslpdartvaairaidphgyrda
lvga
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5mzyD (D:)
phmsatlditpaetvvsllarqiddggvvatgvasplailaiavarathapdltylacvg
sldpeiptllpssedlgyldgrsaeitipdlfdharrgrvdtvffgaaevdaegrtnmta
sgsldkprtkfpgvagaatlrqwvrrpvllvprqsrrnlvpevqvattrdprrpvtlisd
lgvfelgasgarllarhpwasaahiaertgfafqvsealsvtslpdartvaairaidphg
yrdalvga
Sequence, based on observed residues (ATOM records): (download)
>5mzyD (D:)
ditpaetvvsllarqiddggvvatgvasplailaiavarathapdltylacvgsldpeip
tllpssedlgyldgrsaeitipdlfdharrgrvdtvffgaaevdaegrtnmtasgsldkp
rtkfpgvagaatlrqwvrrpvllvprqsrrnlvpevqvattrdprrpvtlisdlgvfelg
asgarllarhpwasaahiaertgfafqvsealsvtslpdartvaairaidphgyrdalvg
a