PDB entry 5mx2

View 5mx2 on RCSB PDB site
Description: Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution
Class: oxidoreductase
Keywords: Photosynthesis, Metal Cluster, EDTA, Hydroxylamine, Oxidoreductase, Thermosynechococcus elongatus
Deposited on 2017-01-20, released 2017-08-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Photosystem II protein D1 1
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2a_
  • Chain 'B':
    Compound: Photosystem II CP47 reaction center protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2b_
  • Chain 'C':
    Compound: Photosystem II CP43 reaction center protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2c_
  • Chain 'D':
    Compound: Photosystem II D2 protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2d_
  • Chain 'E':
    Compound: Cytochrome b559 subunit alpha
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2e_
  • Chain 'F':
    Compound: Cytochrome b559 subunit beta
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Photosystem II reaction center protein H
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2h_
  • Chain 'I':
    Compound: Photosystem II reaction center protein I
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2i_
  • Chain 'J':
    Compound: Photosystem II reaction center protein J
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2j_
  • Chain 'K':
    Compound: Photosystem II reaction center protein K
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2k_
  • Chain 'L':
    Compound: Photosystem II reaction center protein L
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2l_
  • Chain 'M':
    Compound: Photosystem II reaction center protein M
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2m_
  • Chain 'O':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2o_
  • Chain 'R':
    Compound: Photosystem II protein Y
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Photosystem II reaction center protein T
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2t_
  • Chain 'U':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: cytochrome c-550
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2v_
  • Chain 'X':
    Compound: Photosystem II reaction center X protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2x_
  • Chain 'Y':
    Compound: Photosystem II reaction center protein ycf12
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: Photosystem II reaction center protein Z
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2z_
  • Chain 'a':
    Compound: Photosystem II protein D1 1
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: Photosystem II CP47 reaction center protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: Photosystem II CP43 reaction center protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: Photosystem II D2 protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: Cytochrome b559 subunit alpha
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Cytochrome b559 subunit beta
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2f_
  • Chain 'h':
    Compound: Photosystem II reaction center protein H
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: Photosystem II reaction center protein I
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: Photosystem II reaction center protein J
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'k':
    Compound: Photosystem II reaction center protein K
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'l':
    Compound: Photosystem II reaction center protein L
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'm':
    Compound: Photosystem II reaction center protein M
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'o':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'r':
    Compound: Photosystem II protein Y
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 't':
    Compound: Photosystem II reaction center protein T
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'u':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mx2u_
  • Chain 'v':
    Compound: cytochrome c-550
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'x':
    Compound: Photosystem II reaction center X protein
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'y':
    Compound: Photosystem II reaction center protein ycf12
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'z':
    Compound: Photosystem II reaction center protein Z
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, CLA, PHO, BCR, PL9, SQD, LFA, FE, BCT, LMG, DGD, LHG, HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5mx2A (A:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldla

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2A (A:)
nlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepvsgsl
lygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascymgrqw
elsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfqaehn
ilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfgqeeetynivaa
hgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngfnfnhsvidakg
nvintwadiinranlgmevmhernahnfpldla

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5mx2B (B:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatlee
awsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmp
affesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksy
arkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfs
gidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2B (B:)
glpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmf
vlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdle
lfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpv
apewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsss
iaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleea
wsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpa
ffesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksya
rkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg
idpelspeqvewgfyqkvgdvttrr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5mx2C (C:)
mvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfel
ahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyh
airgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapg
ggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhi
lttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqa
qamtflirdqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgp
ngldlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfv
laffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2C (C:)
dqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekpmyeqgl
iliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetleeyssf
fgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvitnptldp
rvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwarrafiw
sgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflirdqklga
nvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnkikndiqp
wqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvghlwhag
raraaaagfekgidresepvlsmpsld

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5mx2D (D:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2D (D:)
gwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassylegcn
fltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqfei
arlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhnwt
lnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtanrf
wsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpefe
tfytknlllnegirawmapqdqphenfvfpeevlprgnal

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5mx2E (E:)
magttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeq
rsiplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2E (E:)
gttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrs
iplvtdrfeakqqvetfleql

  • Chain 'F':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5mx2H (H:)
marrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnv
swkalg

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2H (H:)
arrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnvs
wk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5mx2I (I:)
metlkitvyivvtffvllfvfgflsgdparnpkrkdle

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2I (I:)
metlkitvyivvtffvllfvfgflsgdparnpk

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5mx2J (J:)
mmseggriplwivatvagmgvivivglffygayaglgssl

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2J (J:)
iplwivatvagmgvivivglffygayaglgssl

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >5mx2K (K:)
midalvlvaklpeayaifdplvdvlpvipvlflalafvwqaavgfr

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2K (K:)
lpeayaifdplvdvlpvipvlflalafvwqaavgf

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5mx2L (L:)
mepnpnrqpvelnrtslylglllilvlallfssyffn

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2L (L:)
epnpnrqpvelnrtslylglllilvlallfssyffn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >5mx2M (M:)
mevnqlgliatalfvlvpsvfliilyvqtesqqkss

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2M (M:)
mevnqlgliatalfvlvpsvfliilyvqtesq

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >5mx2O (O:)
mkyrilmatllavclgifslsapafaakqtltyddivgtglankcptlddtargaypids
sqtyriarlclqpttflvkeepknkrqeaefvptklvtrettsldqiqgelkvnsdgslt
fveedgidfqpvtvqmaggeripllftvknlvastqpnvtsittstdfkgefnvpsyrta
nfldpkgrglasgydsaialpqakeeelaranvkrfsltkgqislnvakvdgrtgeiagt
feseqlsdddmgahephevkiqgvfyasiepa

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2O (O:)
tltyddivgtglankcptlddtargaypidssqtyriarlclqpttflvkeepknkrqea
efvptklvtrettsldqiqgelkvnsdgsltfveedgidfqpvtvqmaggeripllftvk
nlvastqpnvtsittstdfkgefnvpsyrtanfldpkgrglasgydsaialpqakeeela
ranvkrfsltkgqislnvakvdgrtgeiagtfeseqlsdddmgahephevkiqgvfyasi
ep

  • Chain 'R':
    No sequence available.

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >5mx2T (T:)
metityvfifaciialfffaiffreppritkk

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2T (T:)
metityvfifaciialfffaiffreppr

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >5mx2V (V:)
mlkkcvwlavalclclwqftmgtalaaeltpevltvplnsegktitltekqylegkrlfq
yacaschvggitktnpsldlrtetlalatpprdnieglvdymknpttydgeqeiaevhps
lrsadifpkmrnltekdlvaiaghilvepkilgdkwgggkvyy

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2V (V:)
aeltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetla
latpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghil
vepkilgdkwgggkvyy

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >5mx2X (X:)
mtitpslkgffigllsgavvlgltfavliaisqidkvqrsl

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2X (X:)
titpslkgffigllsgavvlgltfavliaisqidkvq

  • Chain 'Y':
    No sequence available.

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >5mx2Z (Z:)
mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
vv

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2Z (Z:)
mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
v

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    No sequence available.

  • Chain 'd':
    No sequence available.

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    Sequence, based on SEQRES records: (download) 
    >5mx2f (f:)
mtsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2f (f:)
ypiftvrwvavhtlavptifflgaiaamqfiqr

  • Chain 'h':
    No sequence available.

  • Chain 'i':
    No sequence available.

  • Chain 'j':
    No sequence available.

  • Chain 'k':
    No sequence available.

  • Chain 'l':
    No sequence available.

  • Chain 'm':
    No sequence available.

  • Chain 'o':
    No sequence available.

  • Chain 'r':
    No sequence available.

  • Chain 't':
    No sequence available.

  • Chain 'u':
    Sequence, based on SEQRES records: (download) 
    >5mx2u (u:)
mqrlgrwlalayfvgvsllgwinwsaptlaatasteeelvnvvdeklgtaygekidlnnt
niaafiqyrglyptlaklivknapyesvedvlnipglterqkqilrenlehftvteveta
lveggdrynnglyk

    Sequence, based on observed residues (ATOM records): (download) 
    >5mx2u (u:)
lvnvvdeklgtaygekidlnntniaafiqyrglyptlaklivknapyesvedvlnipglt
erqkqilrenlehftvtevetalveggdrynnglyk

  • Chain 'v':
    No sequence available.

  • Chain 'x':
    No sequence available.

  • Chain 'y':
    No sequence available.

  • Chain 'z':
    No sequence available.