SCOPe 2.06: Structural Classification of Proteins

PDB entry 5mki

View 5mki on RCSB PDB site
Description: Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
Class: RNA binding protein
Keywords: Lsm, SmAP, RNA binding protein
Deposited on 2016-12-05, released 2017-12-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-12-20, with a file datestamp of 2017-12-15.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkia_
Chain 'B':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkib_
Chain 'C':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkic_
Chain 'D':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkid_
Chain 'E':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkie_
Chain 'F':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkif_
Chain 'G':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkig_
Chain 'H':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkih_
Chain 'I':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkii_
Chain 'J':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkij_
Chain 'K':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkik_
Chain 'L':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkil_
Chain 'M':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkim_
Chain 'N':
Compound: Like-Sm ribonucleoprotein core
Species: Methanococcus vannielii SB [TaxId:406327]
Gene: Mevan_0470
Database cross-references and differences (RAF-indexed):
- Uniprot A6UPF5 (Start-71)
Domains in SCOPe 2.06: d5mkin_
Heterogens: CA, EPE, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5mkiA (A:)
mmdtqrpldalgksintnvtvylkdgklvkgrlkaydlhmnvalenakiesdeekefpml
vvrgdnvlyvsl