PDB entry 5m38

View 5m38 on RCSB PDB site
Description: Structure of the TagL peptidoglycan binding domain from EAEC T6SS
Class: sugar binding protein
Keywords: T6SS TagL Peptidoglycan binding domain, sugar binding protein
Deposited on 2016-10-14, released 2018-02-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-02-21, with a file datestamp of 2018-02-16.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: OmpA family protein
    Species: Escherichia coli [TaxId:562]
    Gene: ACU81_04615
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5m38a_
  • Chain 'B':
    Compound: OmpA family protein
    Species: Escherichia coli [TaxId:562]
    Gene: ACU81_04615
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5m38b_
  • Chain 'C':
    Compound: OmpA family protein
    Species: Escherichia coli [TaxId:562]
    Gene: ACU81_04615
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5m38c_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5m38A (A:)
pktvrlnslalfdagkwtlkpgatkwlvnalvdikakagwlivvsghtdntgdplrnqal
slkraeavrdwmrdtgdipqscfavqgygesrpvapndtaegrarnrrveislvpqadac
rlpdvspapeegasenite

    Sequence, based on observed residues (ATOM records): (download) 
    >5m38A (A:)
tvrlnslalfdagkwtlkpgatkwlvnalvdikakagwlivvsghtdntgdplrnqalsl
kraeavrdwmrdtgdipqscfavqgygesrpvapndtaegrarnrrveislvp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5m38B (B:)
pktvrlnslalfdagkwtlkpgatkwlvnalvdikakagwlivvsghtdntgdplrnqal
slkraeavrdwmrdtgdipqscfavqgygesrpvapndtaegrarnrrveislvpqadac
rlpdvspapeegasenite

    Sequence, based on observed residues (ATOM records): (download) 
    >5m38B (B:)
vrlnslalfdagkwtlkpgatkwlvnalvdikakagwlivvsghtdntgdplrnqalslk
raeavrdwmrdtgdipqscfavqgygesrpvapndtaegrarnrrveislvp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5m38C (C:)
pktvrlnslalfdagkwtlkpgatkwlvnalvdikakagwlivvsghtdntgdplrnqal
slkraeavrdwmrdtgdipqscfavqgygesrpvapndtaegrarnrrveislvpqadac
rlpdvspapeegasenite

    Sequence, based on observed residues (ATOM records): (download) 
    >5m38C (C:)
ktvrlnslalfdagkwtlkpgatkwlvnalvdikakagwlivvsghtdntgdplrnqals
lkraeavrdwmrdtgdipqscfavqgygesrpvapndtaegrarnrrveislvp