PDB entry 5lwf
View 5lwf on RCSB PDB site
Description: Structure of a single domain camelid antibody fragment cAb-G10S in complex with the BlaP beta-lactamase from Bacillus licheniformis
Class: hydrolase
Keywords: hydrolase, vhh, aggregation
Deposited on
2016-09-16, released
2017-11-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-10-16, with a file datestamp of
2019-10-11.
Experiment type: XRAY
Resolution: 2.56 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Beta-lactamase
Species: Bacillus licheniformis [TaxId:1402]
Gene: penP, blaP
Database cross-references and differences (RAF-indexed):
- Uniprot P00808
- insertion (167)
- insertion (167)
Domains in SCOPe 2.08: d5lwfa_ - Chain 'B':
Compound: Beta-lactamase
Species: Bacillus licheniformis [TaxId:1402]
Gene: penP, blaP
Database cross-references and differences (RAF-indexed):
- Uniprot P00808
- insertion (167)
- insertion (167)
Domains in SCOPe 2.08: d5lwfb_ - Chain 'C':
Compound: Camelid heavy-chain antibody variable fragment cAb-G10S
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5lwfc1, d5lwfc2 - Chain 'D':
Compound: Camelid heavy-chain antibody variable fragment cAb-G10S
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5lwfd1, d5lwfd2 - Heterogens: ACT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5lwfA (A:)
temkddfakleeqfdaklgifaldtgtnrtvayrpderfafastikaltvgvllqqksie
dlnqritytrddlvnynpitekhvdtgmtlkeladaslrysdnaaqnlilkqiggpeslk
kelrkigdevtnperfepelnevnpgetqdtstaralvtslrafaledpgklpsekrell
idwmkrnttgdaliragvpdgwevadktgaasygtrndiaiiwppkgdpvvlavlssrdk
kdakyddkliaeatkvvmkalnmngkgphhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lwfA (A:)
kddfakleeqfdaklgifaldtgtnrtvayrpderfafastikaltvgvllqqksiedln
qritytrddlvnynpitekhvdtgmtlkeladaslrysdnaaqnlilkqiggpeslkkel
rkigdevtnperfepelnevnpgetqdtstaralvtslrafaledpgklpsekrellidw
mkrnttgdaliragvpdgwevadktgaasygtrndiaiiwppkgdpvvlavlssrdkkda
kyddkliaeatkvvmkaln
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5lwfB (B:)
temkddfakleeqfdaklgifaldtgtnrtvayrpderfafastikaltvgvllqqksie
dlnqritytrddlvnynpitekhvdtgmtlkeladaslrysdnaaqnlilkqiggpeslk
kelrkigdevtnperfepelnevnpgetqdtstaralvtslrafaledpgklpsekrell
idwmkrnttgdaliragvpdgwevadktgaasygtrndiaiiwppkgdpvvlavlssrdk
kdakyddkliaeatkvvmkalnmngkgphhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lwfB (B:)
ddfakleeqfdaklgifaldtgtnrtvayrpderfafastikaltvgvllqqksiedlnq
ritytrddlvnynpitekhvdtgmtlkeladaslrysdnaaqnlilkqiggpeslkkelr
kigdevtnperfepelnevnpgetqdtstaralvtslrafaledpgklpsekrellidwm
krnttgdaliragvpdgwevadktgaasygtrndiaiiwppkgdpvvlavlssrdkkdak
yddkliaeatkvvmkaln
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5lwfC (C:)
qvqlqesggglvqaggslrlscaasgrtfsndhmgwfrkapgkerefvaaitpgtektyy
adsvkgrfafsrdnakntvylqmnslkpedtavyycvatpyyrgsyyaastytywgqgtq
vtvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lwfC (C:)
vqlqesggglvqaggslrlscaasgrtfsndhmgwfrkapgkerefvaaitpgtektyya
dsvkgrfafsrdnakntvylqmnslkpedtavyycvatpyyrgsyyaastytywgqgtqv
tv
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5lwfD (D:)
qvqlqesggglvqaggslrlscaasgrtfsndhmgwfrkapgkerefvaaitpgtektyy
adsvkgrfafsrdnakntvylqmnslkpedtavyycvatpyyrgsyyaastytywgqgtq
vtvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lwfD (D:)
qlqesgvqaggslrlscaasgrtfsndhmgwfrkapgkerefvaaitpgtektyyadsvk
grfafsrdnakntvylqmnslkpedtavyycvatpyyrgsyyaastytywgqgtqvtv