PDB entry 5lmj
View 5lmj on RCSB PDB site
Description: Llama nanobody PorM_19
Class: immune system
Keywords: nanobody, Porphyromonas gingivalis, Type-9 Secretion System (T9SS), immune system
Deposited on
2016-08-01, released
2017-05-03
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-05-03, with a file datestamp of
2017-04-28.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nanobody
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5lmja1, d5lmja2 - Chain 'B':
Compound: Nanobody
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5lmjb1, d5lmjb2 - Chain 'C':
Compound: Nanobody
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5lmjc1, d5lmjc2 - Chain 'D':
Compound: Nanobody
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5lmjd1, d5lmjd2 - Heterogens: PO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5lmjA (A:)
maqvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggst
wyhdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtq
vtvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lmjA (A:)
qvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggstwy
hdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtqvt
vss
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5lmjB (B:)
maqvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggst
wyhdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtq
vtvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lmjB (B:)
qvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggstwy
hdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtqvt
vss
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5lmjC (C:)
maqvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggst
wyhdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtq
vtvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lmjC (C:)
qvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggstwy
hdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtqvt
vss
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5lmjD (D:)
maqvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggst
wyhdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtq
vtvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5lmjD (D:)
qvqlvesggglvqaggslrlsctasgrtfsdydmawfrqapgkerdrvsaistkggstwy
hdsvkgrftisrdnakntvylqmnslkpedtavyycaagavtyysaryeydywgqgtqvt
vss