PDB entry 5lax

View 5lax on RCSB PDB site
Description: Crystal structure of HLA_DRB1*04:01 in complex with alpha-enolase peptide 26-40
Class: immune system
Keywords: HLA, autoimmune desease, rheumathoid arthritis, MHC class II, immune system
Deposited on 2016-06-15, released 2016-12-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-12-07, with a file datestamp of 2016-12-02.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class II histocompatibility antigen, dr alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01903 (Start-180)
      • expression tag (181)
    Domains in SCOPe 2.07: d5laxa1, d5laxa2, d5laxa3
  • Chain 'B':
    Compound: HLA class II histocompatibility antigen, DRB1-4 beta chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13760 (0-189)
      • expression tag (190-192)
    Domains in SCOPe 2.07: d5laxb1, d5laxb2, d5laxb3
  • Chain 'C':
    Compound: hla class II histocompatibility antigen, dr alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5laxc1, d5laxc2
  • Chain 'D':
    Compound: HLA class II histocompatibility antigen, DRB1-4 beta chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13760 (Start-189)
      • expression tag (190)
    Domains in SCOPe 2.07: d5laxd1, d5laxd2, d5laxd3
  • Chain 'E':
    Compound: alpha-enolase peptideTSKGLFRAAVPSGAS
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5LAX (Start-14)
  • Chain 'F':
    Compound: alpha-enolase peptideTSKGLFRAAVPSGAS
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5LAX (Start-14)
  • Heterogens: MLA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5laxA (A:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dssadlvpr
    

    Sequence, based on observed residues (ATOM records): (download)
    >5laxA (A:)
    keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
    niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
    lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    s
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5laxB (B:)
    gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
    gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsl
    tspltvewrassadlvpr
    

    Sequence, based on observed residues (ATOM records): (download)
    >5laxB (B:)
    gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
    gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsl
    tspltvewrassa
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5laxC (C:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dssadlvpr
    

    Sequence, based on observed residues (ATOM records): (download)
    >5laxC (C:)
    keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
    niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
    lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5laxD (D:)
    gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
    gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsl
    tspltvewrassadlvpr
    

    Sequence, based on observed residues (ATOM records): (download)
    >5laxD (D:)
    rprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeywns
    qkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvngfy
    pgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsltsp
    ltvewras
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.