PDB entry 5l9o

View 5l9o on RCSB PDB site
Description: Crystal structure of Agrobacterium tumefaciens C58 strain PBP SocA in complex with glucopine
Class: transport protein
Keywords: periplasmic binding protein, ABC transporter, synthetic opine, transport protein
Deposited on 2016-06-10, released 2016-09-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-11-16, with a file datestamp of 2016-11-11.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: socA, Atu5006
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5l9oa_
  • Chain 'B':
    Compound: Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: socA, Atu5006
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7D447 (20-261)
      • expression tag (19)
    Domains in SCOPe 2.08: d5l9ob1, d5l9ob2
  • Heterogens: GOP, EDO, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5l9oA (A:)
gsshhhhhhssglvprgshmdnplglidpttisvgtmgdakpyafttadgnftgfdielf
lnvagrlgfkkeqvvftgqefsalmpsvangrfdvaaaaigttakrketvdfsdgylagf
lsvltseagitdaaglkgkrlgvvqgtlqeiyaeknfagtdlvkfpdnnsavsalnngtv
dahfldfeaakdysarypalkiavnipsfdapagfvirkgndalrnaldkglkeamqdgt
wkklhekwfpgtpmpaaylpkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5l9oA (A:)
dnplglidpttisvgtmgdakpyafttadgnftgfdielflnvagrlgfkkeqvvftgqe
fsalmpsvangrfdvaaaaigttakrketvdfsdgylagflsvltseagitdaaglkgkr
lgvvqgtlqeiyaeknfagtdlvkfpdnnsavsalnngtvdahfldfeaakdysarypal
kiavnipsfdapagfvirkgndalrnaldkglkeamqdgtwkklhekwfpgtpmpaaylp
k

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5l9oB (B:)
gsshhhhhhssglvprgshmdnplglidpttisvgtmgdakpyafttadgnftgfdielf
lnvagrlgfkkeqvvftgqefsalmpsvangrfdvaaaaigttakrketvdfsdgylagf
lsvltseagitdaaglkgkrlgvvqgtlqeiyaeknfagtdlvkfpdnnsavsalnngtv
dahfldfeaakdysarypalkiavnipsfdapagfvirkgndalrnaldkglkeamqdgt
wkklhekwfpgtpmpaaylpkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5l9oB (B:)
mdnplglidpttisvgtmgdakpyafttadgnftgfdielflnvagrlgfkkeqvvftgq
efsalmpsvangrfdvaaaaigttakrketvdfsdgylagflsvltseagitdaaglkgk
rlgvvqgtlqeiyaeknfagtdlvkfpdnnsavsalnngtvdahfldfeaakdysarypa
lkiavnipsfdapagfvirkgndalrnaldkglkeamqdgtwkklhekwfpgtpmpaayl
pkq