PDB entry 5kve

View 5kve on RCSB PDB site
Description: Zika specific antibody, ZV-48, bound to ZIKA envelope DIII
Class: viral protein/immune system
Keywords: Zika virus, envelope protein, viral protein, single-chain variable fragment, structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2016-07-14, released 2016-08-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-08-24, with a file datestamp of 2016-08-18.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'E':
    Compound: ZIKA Envelope DIII
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kvee_
  • Chain 'H':
    Compound: ZV-48 Antibody scFv Heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KVE (0-End)
    Domains in SCOPe 2.07: d5kveh1, d5kveh2
  • Chain 'L':
    Compound: ZV-48 Antibody scFv Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KVE (0-End)
    Domains in SCOPe 2.07: d5kvel_
  • Heterogens: NA, SO4, ACT, EDO, HOH

PDB Chain Sequences:

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5kveE (E:)
mrlkgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgr
litanpvitestenskmmleldppfgdsyivigvgekkithhwhrsgsti

    Sequence, based on observed residues (ATOM records): (download) 
    >5kveE (E:)
vsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlitan
pvitestenskmmleldppfgdsyivigvgekkithhwhrs

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5kveH (H:)
qvqlqqpgaellkpgasvklsckasgysfsnywmhwvkqrpgqgpewigmihpnsgntky
nekfknkatltvdksssmvymqlssltsedsavfycarlgndmdywgqgtsvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >5kveH (H:)
qvqlqqpgaellkpgasvklsckasgysfsnywmhwvkqrpgqgpewigmihpnsgntky
nekfknkatltvdksssmvymqlssltsedsavfycarlgndmdywgqgtsvtvs

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5kveL (L:)
mdivmsqspsslavsvgekitmsckssqsllysnneknylawyqqkpgqspklliywasa
rdsgvpdrftgsgsgtdftltissvkaedlavfycqqyysypytfgggtkleikggggsg
gggsggggs

    Sequence, based on observed residues (ATOM records): (download) 
    >5kveL (L:)
mdivmsqspsslavsvgekitmsckssqsllysnneknylawyqqkpgqspklliywasa
rdsgvpdrftgsgsgtdftltissvkaedlavfycqqyysypytfgggtkleikg