PDB entry 5ksu
View 5ksu on RCSB PDB site
Description: Crystal structure of HLA-DQ2.5-CLIP1 at 2.73 resolution
Class: immune system
Keywords: HLA, MHC, DQ2.5, CLIP, celiac disease, IMMUNE SYSTEM
Deposited on
2016-07-10, released
2017-04-05
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-04-05, with a file datestamp of
2017-03-31.
Experiment type: XRAY
Resolution: 2.73 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class II histocompatibility antigen, DQ alpha 1 chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQA1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ksua1, d5ksua2 - Chain 'B':
Compound: MHC class II HLA-DQ-beta-1
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQB1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ksub1, d5ksub2 - Chain 'C':
Compound: HLA class II histocompatibility antigen gamma chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: HLA class II histocompatibility antigen, DQ alpha 1 chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQA1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ksud1, d5ksud2 - Chain 'E':
Compound: MHC class II HLA-DQ-beta-1
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQB1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ksue1, d5ksue2 - Chain 'F':
Compound: HLA class II histocompatibility antigen gamma chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5ksuA (A:)
edivadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqf
altniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvn
itwlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhw
epeipapmseltevdiegr
Sequence, based on observed residues (ATOM records): (download)
>5ksuA (A:)
divadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqfa
ltniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvni
twlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhwe
pe
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ksuB (B:)
rdspedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaey
wnsqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsrtealnhhnllvcsvt
dfypaqikvrwfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpsl
qspitvewraqsesaqskvdiegr
Sequence, based on observed residues (ATOM records): (download)
>5ksuB (B:)
spedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaeywn
sqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsnllvcsvtdfypaqikvr
wfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqspitvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5ksuD (D:)
edivadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqf
altniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvn
itwlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhw
epeipapmseltevdiegr
Sequence, based on observed residues (ATOM records): (download)
>5ksuD (D:)
divadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqfa
ltniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvni
twlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhwe
pe
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5ksuE (E:)
rdspedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaey
wnsqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsrtealnhhnllvcsvt
dfypaqikvrwfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpsl
qspitvewraqsesaqskvdiegr
Sequence, based on observed residues (ATOM records): (download)
>5ksuE (E:)
spedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaeywn
sqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsnllvcsvtdfypaqikvr
wfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqspitvewr
- Chain 'F':
No sequence available.