PDB entry 5kk4

View 5kk4 on RCSB PDB site
Description: Crystal Structure of the Plant Defensin NsD7 bound to Phosphatidic Acid
Class: antimicrobial protein
Keywords: defensin, phospholipid, oligomer, phosphatidic acid, ANTIMICROBIAL PROTEIN
Deposited on 2016-06-21, released 2016-10-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NsD7
    Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KK4 (Start-47)
    Domains in SCOPe 2.08: d5kk4a_
  • Chain 'B':
    Compound: NsD7
    Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KK4 (Start-47)
    Domains in SCOPe 2.08: d5kk4b_
  • Chain 'C':
    Compound: NsD7
    Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KK4 (Start-47)
    Domains in SCOPe 2.08: d5kk4c_
  • Chain 'D':
    Compound: NsD7
    Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KK4 (Start-47)
    Domains in SCOPe 2.08: d5kk4d_
  • Chain 'E':
    Compound: NsD7
    Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KK4 (0-47)
    Domains in SCOPe 2.08: d5kk4e1, d5kk4e2
  • Chain 'F':
    Compound: NsD7
    Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KK4 (0-47)
    Domains in SCOPe 2.08: d5kk4f1, d5kk4f2
  • Heterogens: EDO, SO4, ACT, 44E, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5kk4A (A:)
    akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

    Sequence, based on observed residues (ATOM records): (download)
    >5kk4A (A:)
    kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5kk4B (B:)
    akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

    Sequence, based on observed residues (ATOM records): (download)
    >5kk4B (B:)
    kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5kk4C (C:)
    akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

    Sequence, based on observed residues (ATOM records): (download)
    >5kk4C (C:)
    kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5kk4D (D:)
    akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

    Sequence, based on observed residues (ATOM records): (download)
    >5kk4D (D:)
    kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5kk4E (E:)
    akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5kk4F (F:)
    akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc