PDB entry 5kk4
View 5kk4 on RCSB PDB site
Description: Crystal Structure of the Plant Defensin NsD7 bound to Phosphatidic Acid
Class: antimicrobial protein
Keywords: defensin, phospholipid, oligomer, phosphatidic acid, ANTIMICROBIAL PROTEIN
Deposited on
2016-06-21, released
2016-10-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-01-01, with a file datestamp of
2019-12-27.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: NsD7
Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kk4a_ - Chain 'B':
Compound: NsD7
Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kk4b_ - Chain 'C':
Compound: NsD7
Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kk4c_ - Chain 'D':
Compound: NsD7
Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kk4d_ - Chain 'E':
Compound: NsD7
Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kk4e1, d5kk4e2 - Chain 'F':
Compound: NsD7
Species: Nicotiana suaveolens x Nicotiana tabacum [TaxId:157071]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kk4f1, d5kk4f2 - Heterogens: EDO, SO4, ACT, 44E, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5kk4A (A:)
akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
Sequence, based on observed residues (ATOM records): (download)
>5kk4A (A:)
kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5kk4B (B:)
akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
Sequence, based on observed residues (ATOM records): (download)
>5kk4B (B:)
kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5kk4C (C:)
akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
Sequence, based on observed residues (ATOM records): (download)
>5kk4C (C:)
kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5kk4D (D:)
akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
Sequence, based on observed residues (ATOM records): (download)
>5kk4D (D:)
kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>5kk4E (E:)
akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>5kk4F (F:)
akdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc