PDB entry 5jsy
View 5jsy on RCSB PDB site
Description: The 3D structure of the Ni-reconstituted U489C variant of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough at 1.04 Angstrom resolution
Class: oxidoreductase
Keywords: nifese-site h2 cleavage/production, oxidoreductase
Deposited on
2016-05-09, released
2017-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-05-03, with a file datestamp of
2017-04-28.
Experiment type: XRAY
Resolution: 1.04 Å
R-factor: N/A
AEROSPACI score: 0.78
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: periplasmic [nifese] hydrogenase, small subunit
Species: Desulfovibrio vulgaris str. Hildenborough [TaxId:882]
Gene: hysB, DVU_1917
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5jsya_ - Chain 'B':
Compound: periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing
Species: Desulfovibrio vulgaris str. Hildenborough [TaxId:882]
Gene: hysA, DVU_1918
Database cross-references and differences (RAF-indexed):
- Uniprot Q72AS3
- engineered mutation (485)
- Heterogens: SF4, FCO, NI, FE2, H2S, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5jsyA (A:)
msltrrdfvklctgtvagfgisqmfhpavhealagtltgerppvfwlqgqgctgcsvtll
nsvhpsiadvllkvislefhptvmawegehaiehmrkvaekfkgkfflviegsvpveadg
kyciigeanhheismvdalkefgpnaaavlavgtcaayggipaaegsetgatavskflgd
ngiktpvvnipgcpphpdwivgtvvlaldaikknglegglaevvkvldsdgrptpffgrn
ihencpyldkydegvmsatftdkvgcrydlgckgpmtmadcferkwnggvnwcvqnavci
gcvepdfpdgkspfyqa
Sequence, based on observed residues (ATOM records): (download)
>5jsyA (A:)
gtltgerppvfwlqgqgctgcsvtllnsvhpsiadvllkvislefhptvmawegehaieh
mrkvaekfkgkfflviegsvpveadgkyciigeanhheismvdalkefgpnaaavlavgt
caayggipaaegsetgatavskflgdngiktpvvnipgcpphpdwivgtvvlaldaikkn
glegglaevvkvldsdgrptpffgrnihencpyldkydegvmsatftdkvgcrydlgckg
pmtmadcferkwnggvnwcvqnavcigcvepdfpdgkspfyqa
- Chain 'B':
No sequence available.