PDB entry 5jq6
View 5jq6 on RCSB PDB site
Description: Crystal structure of ClfA in complex with the Fab fragment of Tefibazumab
Class: immune system
Keywords: Staphylococcal infections, Clumping factor A, Fibrinogen, Tefibazumab, Aurexis, MSCRAMM, IMMUNE SYSTEM
Deposited on
2016-05-04, released
2017-01-18
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-01-18, with a file datestamp of
2017-01-13.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: clumping factor a
Species: Staphylococcus aureus [TaxId:1280]
Gene: clfA
Database cross-references and differences (RAF-indexed):
- Uniprot G0XY13 (12-End)
- expression tag (2-11)
- engineered mutation (110)
- engineered mutation (324)
- Chain 'H':
Compound: Tefibazumab FAB FRAGMENT HEAVY CHAIN
Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Tefibazumab FAB FRAGMENT LIGHT CHAIN
Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5jq6l1, d5jq6l2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>5jq6L (L:)
divmtqspdslavslgervtmnckssqsvlyssnqknylawyqqkpgqspklliywastr
esgvpdrfsgsgsgtdftltissvqaedlavyychqylssytfgggtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksanr
Sequence, based on observed residues (ATOM records): (download)
>5jq6L (L:)
divmtqspdslavslgervtmnckssqsvlyssnqknylawyqqkpgqspklliywastr
esgvpdrfsgsgsgtdftltissvqaedlavyychqylssytfgggtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqgpvtksanr