PDB entry 5jp3

View 5jp3 on RCSB PDB site
Description: Structure of Xanthomonas campestris effector protein XopD bound to ubiquitin
Class: hydrolase
Keywords: Enzyme, CE clan, Deubiquitinase, DeSUMOylase, hydrolase
Deposited on 2016-05-03, released 2016-07-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-13, with a file datestamp of 2017-09-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Xanthomonas outer protein D
    Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
    Gene: xopD, XCV0437
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (0-74)
      • expression tag (75)
    Domains in SCOPe 2.07: d5jp3b1, d5jp3b2
  • Chain 'C':
    Compound: Xanthomonas outer protein D
    Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
    Gene: xopD, XCV0437
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (0-74)
      • expression tag (75)
    Domains in SCOPe 2.07: d5jp3d1, d5jp3d2
  • Chain 'E':
    Compound: Xanthomonas outer protein D
    Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
    Gene: xopD, XCV0437
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (0-74)
      • expression tag (75)
    Domains in SCOPe 2.07: d5jp3f1, d5jp3f2
  • Chain 'G':
    Compound: Xanthomonas outer protein D
    Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
    Gene: xopD, XCV0437
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (0-74)
      • expression tag (75)
    Domains in SCOPe 2.07: d5jp3h1, d5jp3h2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5jp3B (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5jp3D (D:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5jp3F (F:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5jp3H (H:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx