PDB entry 5jp3
View 5jp3 on RCSB PDB site
Description: Structure of Xanthomonas campestris effector protein XopD bound to ubiquitin
Class: hydrolase
Keywords: Enzyme, CE clan, Deubiquitinase, DeSUMOylase, hydrolase
Deposited on
2016-05-03, released
2016-07-27
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-09-13, with a file datestamp of
2017-09-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.16
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Xanthomonas outer protein D
Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
Gene: xopD, XCV0437
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Polyubiquitin-B
Species: Homo sapiens [TaxId:9606]
Gene: UBB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5jp3b1, d5jp3b2 - Chain 'C':
Compound: Xanthomonas outer protein D
Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
Gene: xopD, XCV0437
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Polyubiquitin-B
Species: Homo sapiens [TaxId:9606]
Gene: UBB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5jp3d1, d5jp3d2 - Chain 'E':
Compound: Xanthomonas outer protein D
Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
Gene: xopD, XCV0437
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Polyubiquitin-B
Species: Homo sapiens [TaxId:9606]
Gene: UBB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5jp3f1, d5jp3f2 - Chain 'G':
Compound: Xanthomonas outer protein D
Species: Xanthomonas campestris pv. vesicatoria (strain 85-10) [TaxId:316273]
Gene: xopD, XCV0437
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Polyubiquitin-B
Species: Homo sapiens [TaxId:9606]
Gene: UBB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5jp3h1, d5jp3h2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5jp3B (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>5jp3D (D:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>5jp3F (F:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>5jp3H (H:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx