PDB entry 5jjq

View 5jjq on RCSB PDB site
Description: Crystal structure of IdnL1
Class: ligase
Keywords: Five layered alpha-beta-alpha-beta-alpha sandwich fold, Ligase, ATP-binding
Deposited on 2016-04-25, released 2017-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-06-28, with a file datestamp of 2017-06-23.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AMP-dependent synthetase and ligase
    Species: Streptomyces sp. ML694-90F3 [TaxId:1265536]
    Gene: idnL1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5jjqa_
  • Chain 'B':
    Compound: AMP-dependent synthetase and ligase
    Species: Streptomyces sp. ML694-90F3 [TaxId:1265536]
    Gene: idnL1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5jjqb_
  • Chain 'C':
    Compound: AMP-dependent synthetase and ligase
    Species: Streptomyces sp. ML694-90F3 [TaxId:1265536]
    Gene: idnL1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5jjqc_
  • Chain 'D':
    Compound: AMP-dependent synthetase and ligase
    Species: Streptomyces sp. ML694-90F3 [TaxId:1265536]
    Gene: idnL1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5jjqd1, d5jjqd2
  • Heterogens: 6L1, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jjqA (A:)
mgsshhhhhhssglvprgshmsrevftlaqnpverlheflltgarltpekpavlelsgte
pgyvsyrqlanraesyaaalgglgldigdrvvlesdtsasaiaallacsslglpfvpvtp
etpakrllavvdtvspalylqaeggrreglpesvgtgrfgpgglvieraprpgrgfrrev
apadpaymvftsgstgrpkgvvmshrailsfyrgmlsqgivgpesrvastapfqfdfsll
diglalgsgatvvpvprallrwprrfvrflrdseatqvngapsiwrgalrheadelaalg
grirgvlfsgepfplpevralqqalplarivncfgstesvaasftdvprpvpdgltklsi
ghahpgaemmlldddgvpvtepgvtghihlrsgslftgywgdpeataralvpdptnpmtg
qtvfrtgdlahrdatgelyfdgradnqvkirgnrvelteverrvaeftgvaaasavllpv
aesdpvlavfvelspgaefdemelgafcleelpdymapqrihvldalplnqngkvdrpal
verlsrelspss

    Sequence, based on observed residues (ATOM records): (download) 
    >5jjqA (A:)
aqnpverlheflltgarltpekpavlelsgtepgyvsyrqlanraesyaaalgglgldig
drvvlesdtsasaiaallacsslglpfvpvtpetpakrllavvdtvspalylqaeggrre
glpesvgtgrfgpgglvieraprpgrgfrrevapadpaymvftpkgvvmshrailsfyrg
mlsqgivgpesrvastapfqfdfslldiglalgsgatvvpvprallrwprrfvrflrdse
atqvngapsiwrgalrheadelaalggrirgvlfsgepfplpevralqqalplarivncf
gstesvaasftdvprpvpdgltklsighahpgaemmlldddgvpvtepgvtghihlrsgs
lftgywgdpeataralvpdptnpmtgqtvfrtgdlahrdatgelyfdgradnqvkirgnr
velteverrvaeftgvaaasavllpvlavfvelspgaefdemelgafcleelpdymapqr
ihvldalp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5jjqB (B:)
mgsshhhhhhssglvprgshmsrevftlaqnpverlheflltgarltpekpavlelsgte
pgyvsyrqlanraesyaaalgglgldigdrvvlesdtsasaiaallacsslglpfvpvtp
etpakrllavvdtvspalylqaeggrreglpesvgtgrfgpgglvieraprpgrgfrrev
apadpaymvftsgstgrpkgvvmshrailsfyrgmlsqgivgpesrvastapfqfdfsll
diglalgsgatvvpvprallrwprrfvrflrdseatqvngapsiwrgalrheadelaalg
grirgvlfsgepfplpevralqqalplarivncfgstesvaasftdvprpvpdgltklsi
ghahpgaemmlldddgvpvtepgvtghihlrsgslftgywgdpeataralvpdptnpmtg
qtvfrtgdlahrdatgelyfdgradnqvkirgnrvelteverrvaeftgvaaasavllpv
aesdpvlavfvelspgaefdemelgafcleelpdymapqrihvldalplnqngkvdrpal
verlsrelspss

    Sequence, based on observed residues (ATOM records): (download) 
    >5jjqB (B:)
vftlaqnpverlheflltgarltpekpavlegyvsyrqlanraesyaaalgglgldigdr
vvlesdtsasaiaallacsslglpfvpvtpetpakrllavvdtvspalylqaeggrregl
pesvgtgrfgpgglvieraprpgrgfrrevapadpaymvfpkgvvmshrailsfyrgmls
qgivgpesrvastapfqfdfslldiglalgsgatvvpvprallrwprrfvrflrdseatq
vngapsiwrgalrheadelaalggrirgvlfsgepfplpevralqqalplarivncfgst
esvaasftdvprpvpdgltklsighahpgaemmlldddgvpvtepgvtghihlrsgslft
gywgdpeataralvpdptnpmtgqtvfrtgdlahrdatgelyfdgradnqvkirgnrvel
teverrvaeftgvaaasavllpdpvlavfvelspgaefdemelgafcleelpdymapqri
hvldalp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5jjqC (C:)
mgsshhhhhhssglvprgshmsrevftlaqnpverlheflltgarltpekpavlelsgte
pgyvsyrqlanraesyaaalgglgldigdrvvlesdtsasaiaallacsslglpfvpvtp
etpakrllavvdtvspalylqaeggrreglpesvgtgrfgpgglvieraprpgrgfrrev
apadpaymvftsgstgrpkgvvmshrailsfyrgmlsqgivgpesrvastapfqfdfsll
diglalgsgatvvpvprallrwprrfvrflrdseatqvngapsiwrgalrheadelaalg
grirgvlfsgepfplpevralqqalplarivncfgstesvaasftdvprpvpdgltklsi
ghahpgaemmlldddgvpvtepgvtghihlrsgslftgywgdpeataralvpdptnpmtg
qtvfrtgdlahrdatgelyfdgradnqvkirgnrvelteverrvaeftgvaaasavllpv
aesdpvlavfvelspgaefdemelgafcleelpdymapqrihvldalplnqngkvdrpal
verlsrelspss

    Sequence, based on observed residues (ATOM records): (download) 
    >5jjqC (C:)
aqnpverlheflltgarltpekpavlelsgtepgyvsyrqlanraesyaaalgglgldig
drvvlesdtsasaiaallacsslglpfvpvtpetpakrllavvdtvspalylqaeggrre
glpesvgtgrfgpgglvieraprpgrgfrrevapadpaymvfrpkgvvmshrailsfyrg
mlsqgivgpesrvastapfqfdfslldiglalgsgatvvpvprallrwprrfvrflrdse
atqvngapsiwrgalrheadelaalggrirgvlfsgepfplpevralqqalplarivncf
gstesvaasftdvprpvpdgltklsighahpgaemmlldddgvpvtepgvtghihlrsgs
lftgywgdpeataralvpdptnpmtgqtvfrtgdlahrdatgelyfdgradnqvkirgnr
velteverrvaeftgvaaasavlldpvlavfvelspgaefdemelgafcleelpdymapq
rihvldalp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5jjqD (D:)
mgsshhhhhhssglvprgshmsrevftlaqnpverlheflltgarltpekpavlelsgte
pgyvsyrqlanraesyaaalgglgldigdrvvlesdtsasaiaallacsslglpfvpvtp
etpakrllavvdtvspalylqaeggrreglpesvgtgrfgpgglvieraprpgrgfrrev
apadpaymvftsgstgrpkgvvmshrailsfyrgmlsqgivgpesrvastapfqfdfsll
diglalgsgatvvpvprallrwprrfvrflrdseatqvngapsiwrgalrheadelaalg
grirgvlfsgepfplpevralqqalplarivncfgstesvaasftdvprpvpdgltklsi
ghahpgaemmlldddgvpvtepgvtghihlrsgslftgywgdpeataralvpdptnpmtg
qtvfrtgdlahrdatgelyfdgradnqvkirgnrvelteverrvaeftgvaaasavllpv
aesdpvlavfvelspgaefdemelgafcleelpdymapqrihvldalplnqngkvdrpal
verlsrelspss

    Sequence, based on observed residues (ATOM records): (download) 
    >5jjqD (D:)
srevftlaqnpverlheflltgarltpekpavlelgyvsyrqlanraesyaaalgglgld
igdrvvlesdtsasaiaallacsslglpfvpvtpetpakrllavvdtvspalylqaeggr
reglpesvgtgrfgpgglvieraprpgrgfrrevapadpaymvftpkgvvmshrailsfy
rgmlsqgivgpesrvastapfqfdfslldiglalgsgatvvpvprallrwprrfvrflrd
seatqvngapsiwrgalrheadelaalggrirgvlfsgepfplpevralqqalplarivn
cfgstesvaasftdvprpvptklsighahpgaemmlldddgvpvtepgvtghihlrsgsl
ftgywgdpeataralvpdptnpmtgqtvfrtgdlahrdatgelyfdgradnqvkirgnrv
elteverrvaeftgvaaasavldpvlavfvelspgaefdemelgafcleelpdymapqri
hvldalp