PDB entry 5jik
View 5jik on RCSB PDB site
Description: Crystal structure of HER2 binding IgG1-Fc (Fcab H10-03-6)
Class: immune system
Keywords: Immune system, antibody engineering, immunoglobulin G1, Fc fragment, glycosylations, CH3 domain, Fcab, HER2, erbB-2
Deposited on
2016-04-22, released
2017-04-12
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-04-12, with a file datestamp of
2017-04-07.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: N/A
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ig gamma-1 chain C region
Species: Homo sapiens [TaxId:9606]
Gene: IGHG1
Database cross-references and differences (RAF-indexed):
- Uniprot P01857
- engineered mutation (133-137)
- engineered mutation (188)
Domains in SCOPe 2.06: d5jika1, d5jika2 - Chain 'B':
Compound: Ig gamma-1 chain C region
Species: Homo sapiens [TaxId:9606]
Gene: IGHG1
Database cross-references and differences (RAF-indexed):
- Uniprot P01857
- engineered mutation (133-137)
- engineered mutation (188-190)
- insertion (190)
- insertion (190)
- insertion (190)
- insertion (190)
- insertion (190)
Domains in SCOPe 2.06: d5jikb1, d5jikb2 - Heterogens: NAG, BMA, MAN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5jikA (A:)
tcppcpapellggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvev
hnaktkpreeqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqpr
epqvytlppsrdeylygdvsltclvkgfypsdiavewesngqpennykttppvldsdgsf
flyskltvprhsarmwrwahgnvfscsvmhealhnhytqkslslspg
Sequence, based on observed residues (ATOM records): (download)
>5jikA (A:)
gpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeqy
nstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsrd
eylygdvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvpgnv
fscsvmhealhnhytqkslsl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5jikB (B:)
tcppcpapellggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvev
hnaktkpreeqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqpr
epqvytlppsrdeylygdvsltclvkgfypsdiavewesngqpennykttppvldsdgsf
flyskltvprhsarmwrwahgnvfscsvmhealhnhytqkslslspg
Sequence, based on observed residues (ATOM records): (download)
>5jikB (B:)
gpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeqy
nstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsrd
eylygdvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvprhs
gnvfscsvmhealhnhytqkslsl