PDB entry 5ja9
View 5ja9 on RCSB PDB site
Description: Crystal structure of the HigB2 toxin in complex with Nb6
Class: toxin
Keywords: toxin-antitoxin system, toxin
Deposited on
2016-04-12, released
2017-04-05
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-04-05, with a file datestamp of
2017-03-31.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nanobody 6
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ja9a1, d5ja9a2 - Chain 'B':
Compound: Nanobody 6
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ja9b1, d5ja9b2 - Chain 'C':
Compound: Toxin HigB-2
Species: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
Gene: higB-2, VC_A0468
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Toxin HigB-2
Species: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
Gene: higB-2, VC_A0468
Database cross-references and differences (RAF-indexed):
- Heterogens: SO4, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5ja9A (A:)
qvqlqesggglvqpggslrlscaasgftfsnyamrwyrqapgeerefvafissvggstny
adsvkgrftisrdngkntlylqmnslkpedtavyfcvarlslisdswgqgtqvtvsshhh
hhh
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ja9B (B:)
qvqlqesggglvqpggslrlscaasgftfsnyamrwyrqapgeerefvafissvggstny
adsvkgrftisrdngkntlylqmnslkpedtavyfcvarlslisdswgqgtqvtvsshhh
hhh
Sequence, based on observed residues (ATOM records): (download)
>5ja9B (B:)
qvqlqesggglvqpggslrlscaasgftfsnyamrwyrqapgeerefvafissvggstny
adsvkgrftisrdngkntlylqmnslkpedtavyfcvarlslisdswgqgtqvtvsshhh
hh
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.