PDB entry 5ja8
View 5ja8 on RCSB PDB site
Description: Crystal structure of the HigB2 toxin in complex with Nb2
Class: toxin
Keywords: toxin-antitoxin system, toxin
Deposited on
2016-04-12, released
2017-04-05
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-04-05, with a file datestamp of
2017-03-31.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Toxin HigB-2
Species: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
Gene: higB-2, VC_A0468
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Nanobody 2
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ja8b1, d5ja8b2 - Chain 'C':
Compound: Toxin HigB-2
Species: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
Gene: higB-2, VC_A0468
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Nanobody 2
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ja8d1, d5ja8d2 - Chain 'E':
Compound: Toxin HigB-2
Species: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
Gene: higB-2, VC_A0468
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Nanobody 2
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ja8f1, d5ja8f2 - Chain 'G':
Compound: Toxin HigB-2
Species: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
Gene: higB-2, VC_A0468
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Nanobody 2
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5ja8h1, d5ja8h2 - Heterogens: PO4, ACT, EDO, EPE, PDO, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ja8B (B:)
qvqlqesggglvqpggslrlscaasgftldyyaigwfrqapgkeregvscisssggttny
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shhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5ja8B (B:)
qvqlqesggglvqpggslrlscaasgftldyyaigwfrqapgkeregvscisssggttny
adsvkgrftvsrdnakntvylqmnslkpedtavyycvadfacplireydywgqgtqvtvs
s
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>5ja8D (D:)
qvqlqesggglvqpggslrlscaasgftldyyaigwfrqapgkeregvscisssggttny
adsvkgrftvsrdnakntvylqmnslkpedtavyycvadfacplireydywgqgtqvtvs
shhhhhh
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>5ja8F (F:)
qvqlqesggglvqpggslrlscaasgftldyyaigwfrqapgkeregvscisssggttny
adsvkgrftvsrdnakntvylqmnslkpedtavyycvadfacplireydywgqgtqvtvs
shhhhhh
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>5ja8H (H:)
qvqlqesggglvqpggslrlscaasgftldyyaigwfrqapgkeregvscisssggttny
adsvkgrftvsrdnakntvylqmnslkpedtavyycvadfacplireydywgqgtqvtvs
shhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5ja8H (H:)
qvqlqesggglvqpggslrlscaasgftldyyaigwfrqapgkeregvscisssggttny
adsvkgrftvsrdnakntvylqmnslkpedtavyycvadfacplireydywgqgtqvtvs
sh