PDB entry 5j9r

View 5j9r on RCSB PDB site
Description: Structure of Penicillin V acylase from Agrobacterium tumefaciens
Class: hydrolase
Keywords: Ntn hydrolase, Penicillin V, quorum quenching, cholylglcine hydrolase, HYDROLASE
Deposited on 2016-04-11, released 2017-06-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-06-21, with a file datestamp of 2017-06-16.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: choloylglycine hydrolase
    Species: Agrobacterium tumefaciens [TaxId:358]
    Gene: SY94_4548
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5j9ra_
  • Chain 'B':
    Compound: choloylglycine hydrolase
    Species: Agrobacterium tumefaciens [TaxId:358]
    Gene: SY94_4548
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5j9rb_
  • Chain 'C':
    Compound: choloylglycine hydrolase
    Species: Agrobacterium tumefaciens [TaxId:358]
    Gene: SY94_4548
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5j9rc_
  • Chain 'D':
    Compound: choloylglycine hydrolase
    Species: Agrobacterium tumefaciens [TaxId:358]
    Gene: SY94_4548
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5j9rd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5j9rA (A:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtdsvpgeerlatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfde
qlalnaywtqiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvp
ygittpdqpnisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlg
anqihiysgmaneslkdtkpfkflgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5j9rA (A:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfdeqlalnaywt
qiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvpygittpdqp
nisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlganqihiysg
maneslkdtkpfkflgl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5j9rB (B:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtdsvpgeerlatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfde
qlalnaywtqiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvp
ygittpdqpnisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlg
anqihiysgmaneslkdtkpfkflgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5j9rB (B:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfdeqlalnaywt
qiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvpygittpdqp
nisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlganqihiysg
maneslkdtkpfkflgl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5j9rC (C:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtdsvpgeerlatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfde
qlalnaywtqiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvp
ygittpdqpnisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlg
anqihiysgmaneslkdtkpfkflgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5j9rC (C:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfdeqlalnaywt
qiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvpygittpdqp
nisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlganqihiysg
maneslkdtkpfkflgl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5j9rD (D:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtdsvpgeerlatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfde
qlalnaywtqiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvp
ygittpdqpnisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlg
anqihiysgmaneslkdtkpfkflgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5j9rD (D:)
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfdeqlalnaywt
qiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvpygittpdqp
nisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlganqihiysg
maneslkdtkpfkflgl