PDB entry 5j5v
View 5j5v on RCSB PDB site
Description: CdiA-CT from uropathogenic Escherichia coli in complex with cognate immunity protein and CysK
Class: toxin
Keywords: complex, toxin, endonuclease, immunity protein
Deposited on
2016-04-04, released
2016-07-27
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-07-27, with a file datestamp of
2016-07-22.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Cysteine synthase A
Species: Escherichia coli O157:H7 [TaxId:83334]
Gene: cysK, Z3680, ECs3286
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5j5va_ - Chain 'B':
Compound: tRNA nuclease CdiA
Species: Escherichia coli O6:K15:H31 (strain 536 / UPEC) [TaxId:362663]
Gene: cdiA, ECP_4580
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Immunity protein CdiI
Species: Escherichia coli O6:K15:H31 (strain 536 / UPEC) [TaxId:362663]
Gene: cdiI, ECP_4579
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Cysteine synthase A
Species: Escherichia coli O157:H7 [TaxId:83334]
Gene: cysK, Z3680, ECs3286
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5j5vd_ - Chain 'E':
Compound: tRNA nuclease CdiA
Species: Escherichia coli O6:K15:H31 (strain 536 / UPEC) [TaxId:362663]
Gene: cdiA, ECP_4580
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Immunity protein CdiI
Species: Escherichia coli O6:K15:H31 (strain 536 / UPEC) [TaxId:362663]
Gene: cdiI, ECP_4579
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5j5vA (A:)
mgkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlk
pgvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgm
kgaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtgg
tltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanld
lklvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilp
ssgerylstalfadlftekelqq
Sequence, based on observed residues (ATOM records): (download)
>5j5vA (A:)
gkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlkp
gvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgmk
gaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtggt
ltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanldl
klvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilps
sgerylstalfad
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5j5vD (D:)
mgkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlk
pgvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgm
kgaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtgg
tltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanld
lklvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilp
ssgerylstalfadlftekelqq
Sequence, based on observed residues (ATOM records): (download)
>5j5vD (D:)
gkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlkp
gvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgmk
gaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtggt
ltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanldl
klvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilps
sgerylstalfad
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.