PDB entry 5j43

View 5j43 on RCSB PDB site
Description: CdiA-CT from uropathogenic Escherichia coli in complex with CysK
Class: toxin
Keywords: complex, toxin, endonuclease
Deposited on 2016-03-31, released 2016-07-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-05-03, with a file datestamp of 2017-04-28.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cysteine synthase A
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: cysK, Z3680, ECs3286
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5j43a_
  • Chain 'B':
    Compound: tRNA nuclease CdiA
    Species: Escherichia coli O6:K15:H31 (strain 536 / UPEC) [TaxId:362663]
    Gene: cdiA, ECP_4580
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0T963 (Start-238)
      • engineered mutation (189)
  • Chain 'E':
    Compound: Cysteine synthase A
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: cysK, Z3680, ECs3286
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5j43e_
  • Chain 'F':
    Compound: tRNA nuclease CdiA
    Species: Escherichia coli O6:K15:H31 (strain 536 / UPEC) [TaxId:362663]
    Gene: cdiA, ECP_4580
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0T963 (Start-238)
      • engineered mutation (189)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5j43A (A:)
mgkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlk
pgvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgm
kgaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtgg
tltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanld
lklvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilp
ssgerylstalfadlftekelqq

    Sequence, based on observed residues (ATOM records): (download) 
    >5j43A (A:)
gkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlkp
gvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgmk
gaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtggt
ltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanldl
klvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilps
sgerylstalfad

  • Chain 'B':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5j43E (E:)
mgkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlk
pgvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgm
kgaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtgg
tltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanld
lklvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilp
ssgerylstalfadlftekelqq

    Sequence, based on observed residues (ATOM records): (download) 
    >5j43E (E:)
gkifednsltightplvrlnrigngrilakvesrnpsfsvkcriganmiwdaekrgvlkp
gvelveptsgntgialayvaaargykltltmpetmsierrkllkalganlvltegakgmk
gaiqkaeeivasnpekylllqqfsnpanpeihekttgpeiwedtdgqvdvfiagvgtggt
ltgvsryikgtkgktdlisvaveptdspviaqalageeikpgphkiqgigagfipanldl
klvdkvigitneeaistarrlmeeegilagissgaavaaalklqedesftnknivvilps
sgerylstalfadl

  • Chain 'F':
    No sequence available.