PDB entry 5j34

View 5j34 on RCSB PDB site
Description: Isopropylmalate dehydrogenase K232M mutant
Class: oxidoreductase
Keywords: dehydrogenase, leucine biosynthesis, glucosinolate biosynthesis, OXIDOREDUCTASE
Deposited on 2016-03-30, released 2016-05-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-07-06, with a file datestamp of 2016-07-01.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-isopropylmalate dehydrogenase 2, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: IMDH2, IMDH, At1g80560, T21F11.11
    Database cross-references and differences (RAF-indexed):
    • Uniprot P93832
      • engineered mutation (231)
    Domains in SCOPe 2.08: d5j34a_
  • Chain 'B':
    Compound: 3-isopropylmalate dehydrogenase 2, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: IMDH2, IMDH, At1g80560, T21F11.11
    Database cross-references and differences (RAF-indexed):
    • Uniprot P93832
      • engineered mutation (231)
    Domains in SCOPe 2.08: d5j34b_
  • Chain 'C':
    Compound: 3-isopropylmalate dehydrogenase 2, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: IMDH2, IMDH, At1g80560, T21F11.11
    Database cross-references and differences (RAF-indexed):
    • Uniprot P93832
      • engineered mutation (231)
    Domains in SCOPe 2.08: d5j34c_
  • Chain 'D':
    Compound: 3-isopropylmalate dehydrogenase 2, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: IMDH2, IMDH, At1g80560, T21F11.11
    Database cross-references and differences (RAF-indexed):
    • Uniprot P93832
      • engineered mutation (231)
    Domains in SCOPe 2.08: d5j34d_
  • Heterogens: MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5j34A (A:)
    maaalqtnirtvkvpatfravskqslapfrvrcavaspgkkrytitllpgdgigpevvsi
    aknvlqqagslegvefnfrempiggaaldlvgvplpeetisaakesdavllgaiggykwd
    nnekhlrpekgllqiraalkvfanlrpatvlpqlvdastlkrevaegvdlmvvreltggi
    yfgeprgiktnengeevgfntevyaaheidriarvafetarkrrgklcsvdmanvleasi
    lwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdtivtnnifgdilsdeasmitgs
    igmlpsaslsdsgpglfepihgsapdiagqdkanplatilsaamllkyglgeekaakrie
    davlvalnngfrtgdiysagtklvgckemgeevlksvdsqvpasv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5j34A (A:)
    krytitllpgdgigpevvsiaknvlqqagslegvefnfrempiggaaldlvgvplpeeti
    saakesdavllgaiggykwdnnekhlrpekgllqiraalkvfanlrpatvlpqlvdastl
    krevaegvdlmvvreltggiyfgeprgiktnengeevgfntevyaaheidriarvafeta
    rkrrgklcsvdmanvleasilwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdti
    vtnnifgdilsdeasmitgsigmlpsaslsdsgpglfepihgsapdiagqdkanplatil
    saamllkyglgeekaakriedavlvalnngfrtgdiysagtklvgckemgeevlksvds
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5j34B (B:)
    maaalqtnirtvkvpatfravskqslapfrvrcavaspgkkrytitllpgdgigpevvsi
    aknvlqqagslegvefnfrempiggaaldlvgvplpeetisaakesdavllgaiggykwd
    nnekhlrpekgllqiraalkvfanlrpatvlpqlvdastlkrevaegvdlmvvreltggi
    yfgeprgiktnengeevgfntevyaaheidriarvafetarkrrgklcsvdmanvleasi
    lwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdtivtnnifgdilsdeasmitgs
    igmlpsaslsdsgpglfepihgsapdiagqdkanplatilsaamllkyglgeekaakrie
    davlvalnngfrtgdiysagtklvgckemgeevlksvdsqvpasv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5j34B (B:)
    krytitllpgdgigpevvsiaknvlqqagslegvefnfrempiggaaldlvgvplpeeti
    saakesdavllgaiggykwdnnekhlrpekgllqiraalkvfanlrpatvlpqlvdastl
    krevaegvdlmvvreltggiyfgeprgiktnengeevgfntevyaaheidriarvafeta
    rkrrgklcsvdmanvleasilwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdti
    vtnnifgdilsdeasmitgsigmlpsaslsdsgpglfepihgsapdiagqdkanplatil
    saamllkyglgeekaakriedavlvalnngfrtgdiysagtklvgckemgeevlksvds
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5j34C (C:)
    maaalqtnirtvkvpatfravskqslapfrvrcavaspgkkrytitllpgdgigpevvsi
    aknvlqqagslegvefnfrempiggaaldlvgvplpeetisaakesdavllgaiggykwd
    nnekhlrpekgllqiraalkvfanlrpatvlpqlvdastlkrevaegvdlmvvreltggi
    yfgeprgiktnengeevgfntevyaaheidriarvafetarkrrgklcsvdmanvleasi
    lwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdtivtnnifgdilsdeasmitgs
    igmlpsaslsdsgpglfepihgsapdiagqdkanplatilsaamllkyglgeekaakrie
    davlvalnngfrtgdiysagtklvgckemgeevlksvdsqvpasv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5j34C (C:)
    krytitllpgdgigpevvsiaknvlqqagslegvefnfrempiggaaldlvgvplpeeti
    saakesdavllgaiggykwdnnekhlrpekgllqiraalkvfanlrpatvlpqlvdastl
    krevaegvdlmvvreltggiyfgeprgiktnengeevgfntevyaaheidriarvafeta
    rkrrgklcsvdmanvleasilwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdti
    vtnnifgdilsdeasmitgsigmlpsaslsdsgpglfepihgsapdiagqdkanplatil
    saamllkyglgeekaakriedavlvalnngfrtgdiysagtklvgckemgeevlksvds
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5j34D (D:)
    maaalqtnirtvkvpatfravskqslapfrvrcavaspgkkrytitllpgdgigpevvsi
    aknvlqqagslegvefnfrempiggaaldlvgvplpeetisaakesdavllgaiggykwd
    nnekhlrpekgllqiraalkvfanlrpatvlpqlvdastlkrevaegvdlmvvreltggi
    yfgeprgiktnengeevgfntevyaaheidriarvafetarkrrgklcsvdmanvleasi
    lwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdtivtnnifgdilsdeasmitgs
    igmlpsaslsdsgpglfepihgsapdiagqdkanplatilsaamllkyglgeekaakrie
    davlvalnngfrtgdiysagtklvgckemgeevlksvdsqvpasv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5j34D (D:)
    krytitllpgdgigpevvsiaknvlqqagslegvefnfrempiggaaldlvgvplpeeti
    saakesdavllgaiggykwdnnekhlrpekgllqiraalkvfanlrpatvlpqlvdastl
    krevaegvdlmvvreltggiyfgeprgiktnengeevgfntevyaaheidriarvafeta
    rkrrgklcsvdmanvleasilwrkrvtalaseypdvelshmyvdnaamqlvrdpkqfdti
    vtnnifgdilsdeasmitgsigmlpsaslsdsgpglfepihgsapdiagqdkanplatil
    saamllkyglgeekaakriedavlvalnngfrtgdiysagtklvgckemgeevlksvds