PDB entry 5j1a

View 5j1a on RCSB PDB site
Description: Antigen presenting molecule
Class: immune system/inhibitor
Keywords: CD1 molecules Immunity, immune system-inhibitor complex
Deposited on 2016-03-29, released 2016-08-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-08-03, with a file datestamp of 2016-07-29.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein CD1a
    Species: Homo sapiens [TaxId:9606]
    Gene: CD1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06126 (Start-294)
      • engineered mutation (29)
      • engineered mutation (67)
      • expression tag (295-300)
    Domains in SCOPe 2.07: d5j1aa1, d5j1aa2, d5j1aa3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j1ab_
  • Heterogens: 6F8, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5j1aA (A:)
    mlflllpllavlpgdgnadglkeplsfhviwiasfynhswkqnlvsgwlsdlqthtwdsn
    sstivflwpwsrgnfsneewkeletlfrirtirsfegirryahelqfeypfeiqvtggce
    lhsgkvsgsflqlayqgsdfvsfqnnswlpypvagnmakhfckvlnqnqhendithnlls
    dtcprfilglldagkahlqrqvkpeawlshgpspgpghlqlvchvsgfypkpvwvmwmrg
    eqeqqgtqrgdilpsadgtwylratlevaageaadlscrvkhsslegqdivlywegslvp
    r
    

    Sequence, based on observed residues (ATOM records): (download)
    >5j1aA (A:)
    lsfhviwiasfynhswkqnlvsgwlsdlqthtwdsnsstivflwpwsrgnfsneewkele
    tlfrirtirsfegirryahelqfeypfeiqvtggcegsflqlayqgsdfvsfqnnswlpy
    pvagnmakhfckvlnqnqhendithnllsdtcprfilglldagkahlqrqvkpeawlshg
    pspgpghlqlvchvsgfypkpvwvmwmrgeqeqqgtqrgdilpsadgtwylratlevaag
    eaadlscrvkhsslegqdivlywegslvpr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5j1aB (B:)
    msrsvalavlallslsgleaiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdll
    kngeriekvehsdlsfskdwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >5j1aB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrd