PDB entry 5j1a
View 5j1a on RCSB PDB site
Description: Antigen presenting molecule
Class: immune system/inhibitor
Keywords: CD1 molecules Immunity, immune system-inhibitor complex
Deposited on
2016-03-29, released
2016-08-03
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-04-04, with a file datestamp of
2018-03-29.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein CD1a
Species: Homo sapiens [TaxId:9606]
Gene: CD1A
Database cross-references and differences (RAF-indexed):
- Uniprot P06126 (Start-294)
- engineered mutation (29)
- engineered mutation (67)
- expression tag (295-300)
Domains in SCOPe 2.08: d5j1aa1, d5j1aa2, d5j1aa3 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5j1ab_ - Heterogens: 6F8, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5j1aA (A:)
mlflllpllavlpgdgnadglkeplsfhviwiasfynhswkqnlvsgwlsdlqthtwdsn
sstivflwpwsrgnfsneewkeletlfrirtirsfegirryahelqfeypfeiqvtggce
lhsgkvsgsflqlayqgsdfvsfqnnswlpypvagnmakhfckvlnqnqhendithnlls
dtcprfilglldagkahlqrqvkpeawlshgpspgpghlqlvchvsgfypkpvwvmwmrg
eqeqqgtqrgdilpsadgtwylratlevaageaadlscrvkhsslegqdivlywegslvp
r
Sequence, based on observed residues (ATOM records): (download)
>5j1aA (A:)
lsfhviwiasfynhswkqnlvsgwlsdlqthtwdsnsstivflwpwsrgnfsneewkele
tlfrirtirsfegirryahelqfeypfeiqvtggcegsflqlayqgsdfvsfqnnswlpy
pvagnmakhfckvlnqnqhendithnllsdtcprfilglldagkahlqrqvkpeawlshg
pspgpghlqlvchvsgfypkpvwvmwmrgeqeqqgtqrgdilpsadgtwylratlevaag
eaadlscrvkhsslegqdivlywegslvpr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5j1aB (B:)
msrsvalavlallslsgleaiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdll
kngeriekvehsdlsfskdwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
Sequence, based on observed residues (ATOM records): (download)
>5j1aB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrd