PDB entry 5iwy

View 5iwy on RCSB PDB site
Description: Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Bacillus subtitis complexed with CMP and Mg2+
Class: lyase
Keywords: lyase
Deposited on 2016-03-23, released 2017-03-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-02-14, with a file datestamp of 2018-02-09.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: ispF, yacN, BSU00910
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5iwya_
  • Chain 'B':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: ispF, yacN, BSU00910
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5iwyb_
  • Chain 'C':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: ispF, yacN, BSU00910
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5iwyc_
  • Chain 'D':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: ispF, yacN, BSU00910
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5iwyd_
  • Chain 'E':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: ispF, yacN, BSU00910
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5iwye_
  • Chain 'F':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Bacillus subtilis (strain 168) [TaxId:224308]
    Gene: ispF, yacN, BSU00910
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5iwyf_
  • Heterogens: MG, C5P, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iwyA (A:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpdtdpefkdadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaeg
leadvsqvnvkattteklgftgraegiaaqatvliqkg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iwyB (B:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpdtdpefkdadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaeg
leadvsqvnvkattteklgftgraegiaaqatvliqkg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iwyC (C:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpdtdpefkdadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaeg
leadvsqvnvkattteklgftgraegiaaqatvliqkg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5iwyD (D:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpdtdpefkdadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaeg
leadvsqvnvkattteklgftgraegiaaqatvliqkg

    Sequence, based on observed residues (ATOM records): (download) 
    >5iwyD (D:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaegleadvsqv
nvkattteklgftgraegiaaqatvliqkg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5iwyE (E:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpdtdpefkdadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaeg
leadvsqvnvkattteklgftgraegiaaqatvliqkg

    Sequence, based on observed residues (ATOM records): (download) 
    >5iwyE (E:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaegleadvsqv
nvkattteklgftgraegiaaqatvliqkg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iwyF (F:)
mfrigqgfdvhqlvegrpliiggieipyekgllghsdadvllhtvadaclgavgegdigk
hfpdtdpefkdadsfkllqhvwgivkqkgyvlgnidctiiaqkpkmlpyiedmrkriaeg
leadvsqvnvkattteklgftgraegiaaqatvliqkg