PDB entry 5ivp

View 5ivp on RCSB PDB site
Description: Crystal structure of the Peptidyl-tRNA hydrolase from Vibrio cholerae in the C121 space group at pH 6.5
Class: hydrolase
Keywords: Peptidyl-tRNA hydrolase, Vibrio cholerae, HYDROLASE, Space group C121, pH 6.5
Deposited on 2016-03-21, released 2017-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-03-22, with a file datestamp of 2017-03-17.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidyl-tRNA hydrolase
    Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
    Gene: pth, VC_2184
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KQ21 (Start-198)
      • see sequence details (3)
    Domains in SCOPe 2.08: d5ivpa_
  • Chain 'B':
    Compound: Peptidyl-tRNA hydrolase
    Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
    Gene: pth, VC_2184
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ivpb_
  • Heterogens: FLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5ivpA (A:)
    gamvsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
    sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghn
    glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrclei
    lmkdgltkaqnrlhtfkae
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ivpA (A:)
    vsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqe
    lrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghnglk
    dtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrcleilmk
    dgltkaqnrlhtfkae
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5ivpB (B:)
    gamvsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
    sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghn
    glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrclei
    lmkdgltkaqnrlhtfkae
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ivpB (B:)
    sqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqel
    rvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghnglkd
    tisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrcleilmkd
    gltkaqnrlhtfkae