PDB entry 5ivp
View 5ivp on RCSB PDB site
Description: Crystal structure of the Peptidyl-tRNA hydrolase from Vibrio cholerae in the C121 space group at pH 6.5
Class: hydrolase
Keywords: Peptidyl-tRNA hydrolase, Vibrio cholerae, HYDROLASE, Space group C121, pH 6.5
Deposited on
2016-03-21, released
2017-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-03-22, with a file datestamp of
2017-03-17.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Peptidyl-tRNA hydrolase
Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
Gene: pth, VC_2184
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5ivpa_ - Chain 'B':
Compound: Peptidyl-tRNA hydrolase
Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
Gene: pth, VC_2184
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5ivpb_ - Heterogens: FLC, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5ivpA (A:)
gamvsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghn
glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrclei
lmkdgltkaqnrlhtfkae
Sequence, based on observed residues (ATOM records): (download)
>5ivpA (A:)
vsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqe
lrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghnglk
dtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrcleilmk
dgltkaqnrlhtfkae
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ivpB (B:)
gamvsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghn
glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrclei
lmkdgltkaqnrlhtfkae
Sequence, based on observed residues (ATOM records): (download)
>5ivpB (B:)
sqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqel
rvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghnglkd
tisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrcleilmkd
gltkaqnrlhtfkae