PDB entry 5imb

View 5imb on RCSB PDB site
Description: Crystal structure of peptidyl-tRNA hydrolase mutant-N14D from Vibrio cholerae
Class: hydrolase
Keywords: Peptidyl-tRNA hydrolase, N14D mutant, Vibrio cholerae, HYDROLASE
Deposited on 2016-03-06, released 2017-03-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-04-12, with a file datestamp of 2017-04-07.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidyl-tRNA hydrolase
    Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
    Gene: pth, VC_2184
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KQ21
      • engineered mutation (15)
    Domains in SCOPe 2.08: d5imba_
  • Chain 'B':
    Compound: Peptidyl-tRNA hydrolase
    Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
    Gene: pth, VC_2184
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KQ21 (Start-198)
      • engineered mutation (15)
    Domains in SCOPe 2.08: d5imbb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5imbA (A:)
gamvsqpikllvgladpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghn
glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqecldaavdesvrclei
lmkdgltkaqnrlhtfkae

    Sequence, based on observed residues (ATOM records): (download) 
    >5imbA (A:)
sqpikllvgladpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqel
rvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghnglkd
tisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqecldaavdesvrcleilmkd
gltkaqnrlhtfka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5imbB (B:)
gamvsqpikllvgladpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghn
glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqecldaavdesvrclei
lmkdgltkaqnrlhtfkae

    Sequence, based on observed residues (ATOM records): (download) 
    >5imbB (B:)
sqpikllvgladpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqel
rvlipttfmnlsgkaiaalanfyqikpeeimvahdeldlppgvakfkqggghgghnglkd
tisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqecldaavdesvrcleilmkd
gltkaqnrlhtfkae