PDB entry 5ike

View 5ike on RCSB PDB site
Description: Crystal structure of mutant-D97N of peptidyl-tRNA hydrolase from Vibrio cholerae
Class: hydrolase
Keywords: Peptidyl-tRNA hydrolase, D97N mutant, Vibrio cholerae, hydrolase
Deposited on 2016-03-03, released 2017-03-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-04-05, with a file datestamp of 2017-03-31.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidyl-tRNA hydrolase
    Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
    Gene: pth, VC_2184
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KQ21 (Start-198)
      • engineered mutation (98)
    Domains in SCOPe 2.08: d5ikea_
  • Chain 'B':
    Compound: Peptidyl-tRNA hydrolase
    Species: Vibrio cholerae O1 biovar El Tor str. N16961 [TaxId:243277]
    Gene: pth, VC_2184
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KQ21 (Start-198)
      • see sequence details (3)
      • engineered mutation (98)
    Domains in SCOPe 2.08: d5ikeb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ikeA (A:)
gamvsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahneldlppgvakfkqggghgghn
glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrclei
lmkdgltkaqnrlhtfkae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ikeA (A:)
sqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqel
rvlipttfmnlsgkaiaalanfyqikpeeimvahneldlppgvakfkqggghgghnglkd
tisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrcleilmkd
gltkaqnrlhtfkae

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ikeB (B:)
gamvsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllin
sqelrvlipttfmnlsgkaiaalanfyqikpeeimvahneldlppgvakfkqggghgghn
glkdtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrclei
lmkdgltkaqnrlhtfkae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ikeB (B:)
vsqpikllvglanpgpeyaktrhnagawvveelarihnvtlknepkffgltgrllinsqe
lrvlipttfmnlsgkaiaalanfyqikpeeimvahneldlppgvakfkqggghgghnglk
dtisklgnnkefyrlrlgighpghkdkvagyvlgkapakeqexldaavdesvrcleilmk
dgltkaqnrlhtfkae