PDB entry 5ha4

View 5ha4 on RCSB PDB site
Description: Structure of a diaminopimelate epimerase from Acinetobacter baumannii
Class: isomerase
Keywords: SSGCID, Acinetobacter baumannii, diaminopimelate epimerase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, PSI-2, Protein Structure Initiative, ISOMERASE
Deposited on 2015-12-30, released 2016-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-01-27, with a file datestamp of 2016-01-22.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Diaminopimelate epimerase
    Species: Acinetobacter baumannii (strain AB307-0294) [TaxId:557600]
    Gene: dapF, ABBFA_000848
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ha4a1, d5ha4a2
  • Chain 'B':
    Compound: Diaminopimelate epimerase
    Species: Acinetobacter baumannii (strain AB307-0294) [TaxId:557600]
    Gene: dapF, ABBFA_000848
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7GY71 (2-281)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5ha4b1, d5ha4b2, d5ha4b3
  • Heterogens: MRD, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ha4A (A:)
hhmlleftkmhglgndfmvvdlisqrayldtatiqrladrhfgvgfdqlliveppdvpea
dfkyrifnadgseveqcgngvrcfarfvherhltnktnitvqtkagivkpelgqngwvrv
nmgypkflpneipfvaeepealytlelandqnisidvvnmgnphavtivpdvltadvagi
gpqveshkrfpervnagfmqviddkhvrlrvfergvgetlacgtgacaaavsgmrrglla
nsvevelaggklqiewqegdvvwmtgptthvydgrldlryfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ha4A (A:)
mlleftkmhglgndfmvvdlisqrayldtatiqrladrhfgvgfdqlliveppdvpeadf
kyrifnadgseveqcgngvrcfarfvherhltnktnitvqtkagivkpelgqngwvrvnm
gypkflpneipfvaeepealytlelandqnisidvvnmgnphavtivpdvltadvagigp
qveshkrfpervnagfmqviddkhvrlrvfergvgetlacgtgacaaavsgmrrgllans
vevelaggklqiewqegdvvwmtgptthvydgrldlryfq

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ha4B (B:)
hhmlleftkmhglgndfmvvdlisqrayldtatiqrladrhfgvgfdqlliveppdvpea
dfkyrifnadgseveqcgngvrcfarfvherhltnktnitvqtkagivkpelgqngwvrv
nmgypkflpneipfvaeepealytlelandqnisidvvnmgnphavtivpdvltadvagi
gpqveshkrfpervnagfmqviddkhvrlrvfergvgetlacgtgacaaavsgmrrglla
nsvevelaggklqiewqegdvvwmtgptthvydgrldlryfq