PDB entry 5h6u

View 5h6u on RCSB PDB site
Description: Structure of alginate-binding protein AlgQ2 in complex with an alginate pentasaccharide
Class: sugar binding protein
Keywords: Alginate oligosaccharide, closed conformation, Solute-binding protein, Sphingomonas, SUGAR BINDING PROTEIN
Deposited on 2016-11-15, released 2017-08-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AlgQ2
    Species: Sphingomonas sp. [TaxId:28214]
    Gene: algQ2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KWT5 (3-489)
      • engineered mutation (252)
    Domains in SCOPe 2.08: d5h6ua_
  • Chain 'B':
    Compound: AlgQ2
    Species: Sphingomonas sp. [TaxId:28214]
    Gene: algQ2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KWT5 (Start-489)
      • engineered mutation (252)
    Domains in SCOPe 2.08: d5h6ub_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5h6uA (A:)
    keatwvtdkpltlkihmhfrdkwvwdenwpvakesfrltnvklqsvankaatnsqeqfnl
    mmasgdlpdvvggdnlkdkfiqygqegafvplnklidqyaphikaffkshpeveraikap
    dgniyfipyvpdgvvargyfiredwlkklnlkppqnidelytvlkafkekdpngngkade
    vpfidrhpdevfrlvnfwgarssgsdnymdfyidngrvkhpwaetafrdgmkhvaqwyke
    glidkeiftrkakareqmfggnlggfthdwfastmtfneglaktvpgfklipiapptnsk
    gqrweedsrqkvrpdgwaitvknknpvetikffdfyfsrpgrdisnfgvpgvtydikngk
    avfkdsvlkspqpvnnqlydmgaqipigfwqdydyerqwttpeaqagidmyvkgkyvmpg
    fegvnmtreeraiydkywadvrtymyemgqawvmgtkdvdktwdeyqrqlklrglyqvlq
    mmqqaydrqykn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5h6uA (A:)
    twvtdkpltlkihmhfrdkwvwdenwpvakesfrltnvklqsvankaatnsqeqfnlmma
    sgdlpdvvggdnlkdkfiqygqegafvplnklidqyaphikaffkshpeveraikapdgn
    iyfipyvpdgvvargyfiredwlkklnlkppqnidelytvlkafkekdpngngkadevpf
    idrhpdevfrlvnfwgarssgsdnymdfyidngrvkhpwaetafrdgmkhvaqwykegli
    dkeiftrkakareqmfggnlggfthdwfastmtfneglaktvpgfklipiapptnskgqr
    weedsrqkvrpdgwaitvknknpvetikffdfyfsrpgrdisnfgvpgvtydikngkavf
    kdsvlkspqpvnnqlydmgaqipigfwqdydyerqwttpeaqagidmyvkgkyvmpgfeg
    vnmtreeraiydkywadvrtymyemgqawvmgtkdvdktwdeyqrqlklrglyqvlqmmq
    qaydrqy
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5h6uB (B:)
    keatwvtdkpltlkihmhfrdkwvwdenwpvakesfrltnvklqsvankaatnsqeqfnl
    mmasgdlpdvvggdnlkdkfiqygqegafvplnklidqyaphikaffkshpeveraikap
    dgniyfipyvpdgvvargyfiredwlkklnlkppqnidelytvlkafkekdpngngkade
    vpfidrhpdevfrlvnfwgarssgsdnymdfyidngrvkhpwaetafrdgmkhvaqwyke
    glidkeiftrkakareqmfggnlggfthdwfastmtfneglaktvpgfklipiapptnsk
    gqrweedsrqkvrpdgwaitvknknpvetikffdfyfsrpgrdisnfgvpgvtydikngk
    avfkdsvlkspqpvnnqlydmgaqipigfwqdydyerqwttpeaqagidmyvkgkyvmpg
    fegvnmtreeraiydkywadvrtymyemgqawvmgtkdvdktwdeyqrqlklrglyqvlq
    mmqqaydrqykn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5h6uB (B:)
    vtdkpltlkihmhfrdkwvwdenwpvakesfrltnvklqsvankaatnsqeqfnlmmasg
    dlpdvvggdnlkdkfiqygqegafvplnklidqyaphikaffkshpeveraikapdgniy
    fipyvpdgvvargyfiredwlkklnlkppqnidelytvlkafkekdpngngkadevpfid
    rhpdevfrlvnfwgarssgsdnymdfyidngrvkhpwaetafrdgmkhvaqwykeglidk
    eiftrkakareqmfggnlggfthdwfastmtfneglaktvpgfklipiapptnskgqrwe
    edsrqkvrpdgwaitvknknpvetikffdfyfsrpgrdisnfgvpgvtydikngkavfkd
    svlkspqpvnnqlydmgaqipigfwqdydyerqwttpeaqagidmyvkgkyvmpgfegvn
    mtreeraiydkywadvrtymyemgqawvmgtkdvdktwdeyqrqlklrglyqvlqmmqqa
    ydrqy