PDB entry 5h56

View 5h56 on RCSB PDB site
Description: ADP and dTDP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
Class: transferase
Keywords: Kinase, Transferase, Rossmann Fold, Product-bound
Deposited on 2016-11-04, released 2017-06-28
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-30, with a file datestamp of 2017-08-25.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: thymidylate kinase
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: tmk, aq_969
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5h56a_
  • Chain 'B':
    Compound: thymidylate kinase
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: tmk, aq_969
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5h56b_
  • Heterogens: ADP, TYD, MG, CA, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5h56A (A:)
    mliafegidgsgkttqakklyeylkqkgyfvslyrepggtkvgevlreillteelderte
    lllfeasrsklieekiipdlkrdkvvildrfvlstiayqgygkgldvefiknlnefatrg
    vkpditllldipvdialrrlkeknrfenkeflekvrkgflelakeeenvvvidasgeeee
    vfkeilralsgvlrv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5h56A (A:)
    mliafegidgsgkttqakklyeylkqkgyfvslyrepggtkvgevlreillteelderte
    lllfeasrsklieekiipdlkrdkvvildrfvlstiayqgygkgldvefiknlnefatrg
    vkpditllldipvdialrrlkeknrfenkeflekvrkgflelakeeenvvvidasgeeee
    vfkeilralsgvlr
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5h56B (B:)
    mliafegidgsgkttqakklyeylkqkgyfvslyrepggtkvgevlreillteelderte
    lllfeasrsklieekiipdlkrdkvvildrfvlstiayqgygkgldvefiknlnefatrg
    vkpditllldipvdialrrlkeknrfenkeflekvrkgflelakeeenvvvidasgeeee
    vfkeilralsgvlrv