PDB entry 5gmz

View 5gmz on RCSB PDB site
Description: Hepatitis B virus core protein Y132A mutant in complex with 4-methyl heteroaryldihydropyrimidine
Class: viral protein
Keywords: HBV, capid assembly, HAP, core protein, VIRAL PROTEIN
Deposited on 2016-07-18, released 2016-08-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-09-07, with a file datestamp of 2016-09-02.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-End)
      • engineered mutation (131)
    Domains in SCOPe 2.08: d5gmza_
  • Chain 'B':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-End)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5gmzb1, d5gmzb2
  • Chain 'C':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-End)
      • engineered mutation (131)
    Domains in SCOPe 2.08: d5gmzc_
  • Chain 'D':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-End)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5gmzd1, d5gmzd2
  • Chain 'E':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-End)
      • engineered mutation (131)
    Domains in SCOPe 2.08: d5gmze_
  • Chain 'F':
    Compound: Core protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7R9I1 (0-148)
      • engineered mutation (131)
      • expression tag (149-154)
    Domains in SCOPe 2.08: d5gmzf1, d5gmzf2
  • Heterogens: IPA, 6XU, GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5gmzA (A:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5gmzA (A:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5gmzB (B:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5gmzB (B:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstenlyfq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5gmzC (C:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5gmzC (C:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5gmzD (D:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5gmzD (D:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpenlyfq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5gmzE (E:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5gmzE (E:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5gmzF (F:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlpettvvenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >5gmzF (F:)
mdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehcsphhtalrqail
cwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhiscltfgretvleylv
sfgvwirtppaarppnapilstlvenlyfq