PDB entry 5fh5

View 5fh5 on RCSB PDB site
Description: The structure of rat cytosolic PEPCK variant E89Q in complex with phosphoglycolate and GDP
Class: lyase
Keywords: kinase, gluconeogenesis, lyase
Deposited on 2015-12-21, released 2016-11-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
    Species: Rattus norvegicus [TaxId:10116]
    Gene: PCK1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07379 (Start-621)
      • engineered mutation (88)
    Domains in SCOPe 2.08: d5fh5a1, d5fh5a2
  • Heterogens: MN, GDP, PGA, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5fh5A (A:)
    mppqlhngldfsakviqgsldslpqevrkfvegnaqlcqpeyihicdgseeeygrllahm
    qeegvirklkkydncwlaltdprdvariqsktviitqeqrdtvpipksgqsqlgrwmsee
    dfekafnarfpgcmkgrtmyvipfsmgplgsplakigieltdspyvvasmrimtrmgtsv
    lealgdgefikclhsvgcplplkkplvnnwacnpeltliahlpdrreiisfgsgyggnsl
    lgkkcfalriasrlakeegwlaehmlilgitnpegkkkylaaafpsacgktnlammnptl
    pgwkvecvgddiawmkfdaqgnlrainpengffgvapgtsvktnpnaiktiqkntiftnv
    aetsdggvywegideplapgvtitswknkewrpqdeepcahpnsrfctpasqcpiidpaw
    espegvpiegiifggrrpagvplvyealswqhgvfvgaamrseataaaehkgkvimhdpf
    amrpffgynfgkylahwlsmahrpaaklpkifhvnwfrkdkngkflwpgfgensrvlewm
    fgriegedsakltpigyvpkedalnlkglgdvnveelfgiskefwekeveeidkyledqv
    nadlpyeierelralkqrisqm
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fh5A (A:)
    hngldfsakviqgsldslpqevrkfvegnaqlcqpeyihicdgseeeygrllahmqeegv
    irklkkydncwlaltdprdvariqsktviitqeqrdtvpipksgqsqlgrwmseedfeka
    fnarfpgcmkgrtmyvipfsmgplgsplakigieltdspyvvasmrimtrmgtsvlealg
    dgefikclhsvgcplplkkplvnnwacnpeltliahlpdrreiisfgsgyggnsllgkkc
    falriasrlakeegwlaehmlilgitnpegkkkylaaafpsacgktnlammnptlpgwkv
    ecvgddiawmkfdaqgnlrainpengffgvapgtsvktnpnaiktiqkntiftnvaetsd
    ggvywegideplapgvtitswknkewrpqdeepcahpnsrfctpasqcpiidpawespeg
    vpiegiifggrrpagvplvyealswqhgvfvgaamrseatkvimhdpfamrpffgynfgk
    ylahwlsmahrpaaklpkifhvnwfrkdkngkflwpgfgensrvlewmfgriegedsakl
    tpigyvpkedalnlkglgdvnveelfgiskefwekeveeidkyledqvnadlpyeierel
    ralkqrisqm