PDB entry 5fdh

View 5fdh on RCSB PDB site
Description: crystal structure of oxa-405 beta-lactamase
Class: hydrolase
Keywords: class d beta-lactamase oxa-405, antibiotic, hydrolase
Deposited on 2015-12-16, released 2016-12-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-05, with a file datestamp of 2021-04-30.
Experiment type: XRAY
Resolution: 2.26 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-lactamase
    Species: Serratia marcescens [TaxId:615]
    Gene: blaOXA-405
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0F6P2I5 (1-239)
      • initiating methionine (0)
      • expression tag (240-241)
    Domains in SCOPe 2.08: d5fdha1, d5fdha2
  • Chain 'B':
    Compound: Beta-lactamase
    Species: Serratia marcescens [TaxId:615]
    Gene: blaOXA-405
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0F6P2I5 (1-239)
      • initiating methionine (0)
      • expression tag (240-241)
    Domains in SCOPe 2.08: d5fdhb1, d5fdhb2
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5fdhA (A:)
mkewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnslial
dlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlha
fdygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteang
dyiiraktgyspkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqekiip
lehhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5fdhA (A:)
mkewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnslial
dlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlha
fdygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteang
dyiiraktgyspkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqekiip
le

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5fdhB (B:)
mkewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnslial
dlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlha
fdygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteang
dyiiraktgyspkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqekiip
lehhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5fdhB (B:)
mkewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnslial
dlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlha
fdygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteang
dyiiraktgyspkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqekiip
le