PDB entry 5fdf

View 5fdf on RCSB PDB site
Description: Crystal structure of the monoclinic form of Thermotoga maritima Acetyl Esterase TM0077 (apo structure) at 1.76 Angstrom resolution
Class: hydrolase
Keywords: hydrolase, carbohydrate metabolism, cephalosporin deacetylase, Rossmann fold
Deposited on 2015-12-16, released 2016-04-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-05-04, with a file datestamp of 2016-04-29.
Experiment type: XRAY
Resolution: 1.76 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cephalosporin-C deacetylase
    Species: Thermotoga maritima [TaxId:2336]
    Gene: axeA, TM_0077
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fdfa_
  • Chain 'B':
    Compound: Cephalosporin-C deacetylase
    Species: Thermotoga maritima [TaxId:2336]
    Gene: axeA, TM_0077
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fdfb_
  • Chain 'C':
    Compound: Cephalosporin-C deacetylase
    Species: Thermotoga maritima [TaxId:2336]
    Gene: axeA, TM_0077
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fdfc_
  • Chain 'D':
    Compound: Cephalosporin-C deacetylase
    Species: Thermotoga maritima [TaxId:2336]
    Gene: axeA, TM_0077
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fdfd_
  • Chain 'E':
    Compound: Cephalosporin-C deacetylase
    Species: Thermotoga maritima [TaxId:2336]
    Gene: axeA, TM_0077
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fdfe_
  • Chain 'F':
    Compound: Cephalosporin-C deacetylase
    Species: Thermotoga maritima [TaxId:2336]
    Gene: axeA, TM_0077
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fdff_
  • Heterogens: CL, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5fdfA (A:)
    mgsdkihhhhhhmaffdlpleelkkyrperyeekdfdefweetlaesekfpldpvferme
    shlktveaydvtfsgyrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsm
    gyicfvmdtrgqgsgwlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavrav
    eaaasfpqvdqeriviaggsqgggialavsalskkakallcdvpflchfrravqlvdthp
    yaeitnflkthrdkeeivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaayny
    yagpkeiriypynnhegggsfqaveqvkflkklfekg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fdfA (A:)
    fdlpleelkkyrperyeekdfdefweetlaesekfpldpvfermeshlktveaydvtfsg
    yrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsmgyicfvmdtrgqgsg
    wlkgdtpdypgpvdpqypgfmtrgildprtyyyrrvftdavraveaaasfpqvdqerivi
    aggsqgggialavsalskkakallcdvpflchfrravqlvdthpyaeitnflkthrdkee
    ivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaaynyyagpkeiriypynnhe
    gggsfqaveqvkflkklfe
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5fdfB (B:)
    mgsdkihhhhhhmaffdlpleelkkyrperyeekdfdefweetlaesekfpldpvferme
    shlktveaydvtfsgyrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsm
    gyicfvmdtrgqgsgwlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavrav
    eaaasfpqvdqeriviaggsqgggialavsalskkakallcdvpflchfrravqlvdthp
    yaeitnflkthrdkeeivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaayny
    yagpkeiriypynnhegggsfqaveqvkflkklfekg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fdfB (B:)
    fdlpleelkkyrperyeekdfdefweetlaesekfpldpvfermeshlktveaydvtfsg
    yrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsmgyicfvmdtrgqgsg
    wlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavraveaaasfpqvdqeriv
    iaggsqgggialavsalskkakallcdvpflchfrravqlvdthpyaeitnflkthrdke
    eivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaaynyyagpkeiriypynnh
    egggsfqaveqvkflkklfe
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5fdfC (C:)
    mgsdkihhhhhhmaffdlpleelkkyrperyeekdfdefweetlaesekfpldpvferme
    shlktveaydvtfsgyrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsm
    gyicfvmdtrgqgsgwlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavrav
    eaaasfpqvdqeriviaggsqgggialavsalskkakallcdvpflchfrravqlvdthp
    yaeitnflkthrdkeeivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaayny
    yagpkeiriypynnhegggsfqaveqvkflkklfekg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fdfC (C:)
    fdlpleelkkyrperyeekdfdefweetlaesekfpldpvfermeshlktveaydvtfsg
    yrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsmgyicfvmdtrgqgsg
    wlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavraveaaasfpqvdqeriv
    iaggsqgggialavsalskkakallcdvpflchfrravqlvdthpyaeitnflkthrdke
    eivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaaynyyagpkeiriypynnh
    egggsfqaveqvkflkklfe
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5fdfD (D:)
    mgsdkihhhhhhmaffdlpleelkkyrperyeekdfdefweetlaesekfpldpvferme
    shlktveaydvtfsgyrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsm
    gyicfvmdtrgqgsgwlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavrav
    eaaasfpqvdqeriviaggsqgggialavsalskkakallcdvpflchfrravqlvdthp
    yaeitnflkthrdkeeivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaayny
    yagpkeiriypynnhegggsfqaveqvkflkklfekg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fdfD (D:)
    fdlpleelkkyrperyeekdfdefweetlaesekfpldpvfermeshlktveaydvtfsg
    yrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsmgyicfvmdtrgqgsg
    wlkgdtpdypgpvdpqypgfmtrgildprtyyyrrvftdavraveaaasfpqvdqerivi
    aggsqgggialavsalskkakallcdvpflchfrravqlvdthpyaeitnflkthrdkee
    ivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaaynyyagpkeiriypynnhe
    gggsfqaveqvkflkklfe
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5fdfE (E:)
    mgsdkihhhhhhmaffdlpleelkkyrperyeekdfdefweetlaesekfpldpvferme
    shlktveaydvtfsgyrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsm
    gyicfvmdtrgqgsgwlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavrav
    eaaasfpqvdqeriviaggsqgggialavsalskkakallcdvpflchfrravqlvdthp
    yaeitnflkthrdkeeivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaayny
    yagpkeiriypynnhegggsfqaveqvkflkklfekg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fdfE (E:)
    fdlpleelkkyrperyeekdfdefweetlaesekfpldpvfermeshlktveaydvtfsg
    yrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsmgyicfvmdtrgqgsg
    wlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavraveaaasfpqvdqeriv
    iaggsqgggialavsalskkakallcdvpflchfrravqlvdthpyaeitnflkthrdke
    eivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaaynyyagpkeiriypynnh
    egggsfqaveqvkflkklfe
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5fdfF (F:)
    mgsdkihhhhhhmaffdlpleelkkyrperyeekdfdefweetlaesekfpldpvferme
    shlktveaydvtfsgyrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsm
    gyicfvmdtrgqgsgwlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavrav
    eaaasfpqvdqeriviaggsqgggialavsalskkakallcdvpflchfrravqlvdthp
    yaeitnflkthrdkeeivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaayny
    yagpkeiriypynnhegggsfqaveqvkflkklfekg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fdfF (F:)
    fdlpleelkkyrperyeekdfdefweetlaesekfpldpvfermeshlktveaydvtfsg
    yrgqrikgwllvpkleeeklpcvvqyigynggrgfphdwlfwpsmgyicfvmdtrgqgsg
    wlkgdtpdypegpvdpqypgfmtrgildprtyyyrrvftdavraveaaasfpqvdqeriv
    iaggsqgggialavsalskkakallcdvpflchfrravqlvdthpyaeitnflkthrdke
    eivfrtlsyfdgvnfaarakipalfsvglmdnicppstvfaaynyyagpkeiriypynnh
    egggsfqaveqvkflkklfe